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BPHL (biphenyl hydrolase like)

Identity

Alias_namesMCNAA
biphenyl hydrolase-like (serine hydrolase)
Alias_symbol (synonym)Bph-rp
VACVase
Other aliasBPH-RP
VACVASE
HGNC (Hugo) BPHL
LocusID (NCBI) 670
Atlas_Id 60791
Location 6p25.2  [Link to chromosome band 6p25]
Location_base_pair Starts at 3118376 and ends at 3153198 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BPHL (6p25.2) / BPHL (6p25.2)BPHL (6p25.2) / MFSD9 (2q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPHL   1094
Cards
Entrez_Gene (NCBI)BPHL  670  biphenyl hydrolase like
AliasesBPH-RP; MCNAA; VACVASE
GeneCards (Weizmann)BPHL
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:3118376-3153198 [Contig_View]  BPHL [Vega]
TCGA cBioPortalBPHL
AceView (NCBI)BPHL
Genatlas (Paris)BPHL
WikiGenes670
SOURCE (Princeton)BPHL
Genetics Home Reference (NIH)BPHL
Genomic and cartography
GoldenPath hg38 (UCSC)BPHL  -     chr6:3118376-3153198 +  6p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BPHL  -     6p25.2   [Description]    (hg19-Feb_2009)
EnsemblBPHL - 6p25.2 [CytoView hg19]  BPHL - 6p25.2 [CytoView hg38]
Mapping of homologs : NCBIBPHL [Mapview hg19]  BPHL [Mapview hg38]
OMIM603156   
Gene and transcription
Genbank (Entrez)AJ617684 AK297518 AK314909 AL832502 BC037778
RefSeq transcript (Entrez)NM_001302777 NM_004332
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BPHL
Cluster EST : UnigeneHs.10136 [ NCBI ]
CGAP (NCI)Hs.10136
Gene ExpressionBPHL [ NCBI-GEO ]   BPHL [ EBI - ARRAY_EXPRESS ]   BPHL [ SEEK ]   BPHL [ MEM ]
Gene Expression Viewer (FireBrowse)BPHL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)670
GTEX Portal (Tissue expression)BPHL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WA6
Splice isoforms : SwissVarQ86WA6
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusQ86WA6
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)   
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1   
Domain families : Pfam (Sanger)Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam00561   
Conserved Domain (NCBI)BPHL
DMDM Disease mutations670
Blocks (Seattle)BPHL
PDB (SRS)2OCG    2OCI    2OCK    2OCL   
PDB (PDBSum)2OCG    2OCI    2OCK    2OCL   
PDB (IMB)2OCG    2OCI    2OCK    2OCL   
PDB (RSDB)2OCG    2OCI    2OCK    2OCL   
Structural Biology KnowledgeBase2OCG    2OCI    2OCK    2OCL   
SCOP (Structural Classification of Proteins)2OCG    2OCI    2OCK    2OCL   
CATH (Classification of proteins structures)2OCG    2OCI    2OCK    2OCL   
SuperfamilyQ86WA6
Peptide AtlasQ86WA6
HPRD04403
IPIIPI00384428   IPI00003990   IPI00844403   IPI00926176   IPI00909698   IPI00925185   
Protein Interaction databases
DIP (DOE-UCLA)Q86WA6
IntAct (EBI)Q86WA6
BioGRIDBPHL
STRING (EMBL)BPHL
ZODIACBPHL
Ontologies - Pathways
QuickGOQ86WA6
Ontology : AmiGOmitochondrion  mitochondrial outer membrane  cellular amino acid metabolic process  xenobiotic metabolic process  response to toxic substance  alpha-amino-acid esterase activity  extracellular exosome  
Ontology : EGO-EBImitochondrion  mitochondrial outer membrane  cellular amino acid metabolic process  xenobiotic metabolic process  response to toxic substance  alpha-amino-acid esterase activity  extracellular exosome  
NDEx NetworkBPHL
Atlas of Cancer Signalling NetworkBPHL
Wikipedia pathwaysBPHL
Orthology - Evolution
OrthoDB670
Phylogenetic Trees/Animal Genes : TreeFamBPHL
HOVERGENQ86WA6
HOGENOMQ86WA6
Homologs : HomoloGeneBPHL
Homology/Alignments : Family Browser (UCSC)BPHL
Gene fusions - Rearrangements
Fusion : QuiverBPHL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPHL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPHL
dbVarBPHL
ClinVarBPHL
1000_GenomesBPHL 
Exome Variant ServerBPHL
Varsome BrowserBPHL
Genetic variants : HAPMAP670
Genomic Variants (DGV)BPHL [DGVbeta]
DECIPHERBPHL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBPHL 
Mutations
ICGC Data PortalBPHL 
TCGA Data PortalBPHL 
Broad Tumor PortalBPHL
OASIS PortalBPHL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBPHL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBPHL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch BPHL
DgiDB (Drug Gene Interaction Database)BPHL
DoCM (Curated mutations)BPHL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPHL (select a term)
intoGenBPHL
Cancer3DBPHL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603156   
Orphanet
DisGeNETBPHL
MedgenBPHL
Genetic Testing Registry BPHL
NextProtQ86WA6 [Medical]
TSGene670
GENETestsBPHL
Target ValidationBPHL
Huge Navigator BPHL [HugePedia]
snp3D : Map Gene to Disease670
BioCentury BCIQBPHL
ClinGenBPHL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD670
Chemical/Pharm GKB GenePA25402
Clinical trialBPHL
Miscellaneous
canSAR (ICR)BPHL (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPHL
EVEXBPHL
GoPubMedBPHL
iHOPBPHL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:37:00 CEST 2018

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