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BPIFA2 (BPI fold containing family A, member 2)

Identity

Alias_namesC20orf70
chromosome 20 open reading frame 70
Alias_symbol (synonym)bA49G10.1
SPLUNC2
PSP
Other alias
HGNC (Hugo) BPIFA2
LocusID (NCBI) 140683
Atlas_Id 60792
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31755960 and ends at 31769223 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CD74 (5q32) / BPIFA2 (20q11.21)MARK2 (11q13.1) / BPIFA2 (20q11.21)PTPRA (20p13) / BPIFA2 (20q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPIFA2   16203
Cards
Entrez_Gene (NCBI)BPIFA2  140683  BPI fold containing family A, member 2
AliasesC20orf70; PSP; SPLUNC2; bA49G10.1
GeneCards (Weizmann)BPIFA2
Ensembl hg19 (Hinxton)ENSG00000131050 [Gene_View]  chr20:31755960-31769223 [Contig_View]  BPIFA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131050 [Gene_View]  chr20:31755960-31769223 [Contig_View]  BPIFA2 [Vega]
ICGC DataPortalENSG00000131050
TCGA cBioPortalBPIFA2
AceView (NCBI)BPIFA2
Genatlas (Paris)BPIFA2
WikiGenes140683
SOURCE (Princeton)BPIFA2
Genetics Home Reference (NIH)BPIFA2
Genomic and cartography
GoldenPath hg19 (UCSC)BPIFA2  -     chr20:31755960-31769223 +  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BPIFA2  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblBPIFA2 - 20q11.21 [CytoView hg19]  BPIFA2 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIBPIFA2 [Mapview hg19]  BPIFA2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF432917 AK130543 AK130550 AK291854 AY359055
RefSeq transcript (Entrez)NM_080574
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)BPIFA2
Cluster EST : UnigeneHs.125960 [ NCBI ]
CGAP (NCI)Hs.125960
Alternative Splicing GalleryENSG00000131050
Gene ExpressionBPIFA2 [ NCBI-GEO ]   BPIFA2 [ EBI - ARRAY_EXPRESS ]   BPIFA2 [ SEEK ]   BPIFA2 [ MEM ]
Gene Expression Viewer (FireBrowse)BPIFA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140683
GTEX Portal (Tissue expression)BPIFA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DR5
Splice isoforms : SwissVarQ96DR5
PhosPhoSitePlusQ96DR5
Domains : Interpro (EBI)Bactericidal_perm-incr_a/b_dom    Lipid-bd_serum_glycop_N   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)   
Domain families : Pfam (NCBI)pfam01273   
Conserved Domain (NCBI)BPIFA2
DMDM Disease mutations140683
Blocks (Seattle)BPIFA2
SuperfamilyQ96DR5
Human Protein AtlasENSG00000131050
Peptide AtlasQ96DR5
HPRD12781
IPIIPI00304557   IPI00442534   IPI00744736   
Protein Interaction databases
DIP (DOE-UCLA)Q96DR5
IntAct (EBI)Q96DR5
FunCoupENSG00000131050
BioGRIDBPIFA2
STRING (EMBL)BPIFA2
ZODIACBPIFA2
Ontologies - Pathways
QuickGOQ96DR5
Ontology : AmiGOlipopolysaccharide binding  protein binding  extracellular region  defense response to bacterium  extracellular exosome  
Ontology : EGO-EBIlipopolysaccharide binding  protein binding  extracellular region  defense response to bacterium  extracellular exosome  
NDEx NetworkBPIFA2
Atlas of Cancer Signalling NetworkBPIFA2
Wikipedia pathwaysBPIFA2
Orthology - Evolution
OrthoDB140683
GeneTree (enSembl)ENSG00000131050
Phylogenetic Trees/Animal Genes : TreeFamBPIFA2
HOVERGENQ96DR5
HOGENOMQ96DR5
Homologs : HomoloGeneBPIFA2
Homology/Alignments : Family Browser (UCSC)BPIFA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPIFA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPIFA2
dbVarBPIFA2
ClinVarBPIFA2
1000_GenomesBPIFA2 
Exome Variant ServerBPIFA2
ExAC (Exome Aggregation Consortium)BPIFA2 (select the gene name)
Genetic variants : HAPMAP140683
Genomic Variants (DGV)BPIFA2 [DGVbeta]
DECIPHER (Syndromes)20:31755960-31769223  ENSG00000131050
CONAN: Copy Number AnalysisBPIFA2 
Mutations
ICGC Data PortalBPIFA2 
TCGA Data PortalBPIFA2 
Broad Tumor PortalBPIFA2
OASIS PortalBPIFA2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBPIFA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BPIFA2
DgiDB (Drug Gene Interaction Database)BPIFA2
DoCM (Curated mutations)BPIFA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPIFA2 (select a term)
intoGenBPIFA2
Cancer3DBPIFA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBPIFA2
Genetic Testing Registry BPIFA2
NextProtQ96DR5 [Medical]
TSGene140683
GENETestsBPIFA2
Huge Navigator BPIFA2 [HugePedia]
snp3D : Map Gene to Disease140683
BioCentury BCIQBPIFA2
ClinGenBPIFA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140683
Chemical/Pharm GKB GenePA25781
Clinical trialBPIFA2
Miscellaneous
canSAR (ICR)BPIFA2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPIFA2
EVEXBPIFA2
GoPubMedBPIFA2
iHOPBPIFA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:59 CET 2017

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