Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BPIFA2 (BPI fold containing family A member 2)

Identity

Alias (NCBI)C20orf70
PSP
SPLUNC2
bA49G10.1
HGNC (Hugo) BPIFA2
HGNC Alias symbbA49G10.1
SPLUNC2
PSP
HGNC Previous nameC20orf70
HGNC Previous namechromosome 20 open reading frame 70
LocusID (NCBI) 140683
Atlas_Id 60792
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 33168159 and ends at 33181412 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD74 (5q32) / BPIFA2 (20q11.21)MARK2 (11q13.1) / BPIFA2 (20q11.21)PTPRA (20p13) / BPIFA2 (20q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)BPIFA2   16203
Cards
Entrez_Gene (NCBI)BPIFA2    BPI fold containing family A member 2
AliasesC20orf70; PSP; SPLUNC2; bA49G10.1
GeneCards (Weizmann)BPIFA2
Ensembl hg19 (Hinxton)ENSG00000131050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131050 [Gene_View]  ENSG00000131050 [Sequence]  chr20:33168159-33181412 [Contig_View]  BPIFA2 [Vega]
ICGC DataPortalENSG00000131050
TCGA cBioPortalBPIFA2
AceView (NCBI)BPIFA2
Genatlas (Paris)BPIFA2
SOURCE (Princeton)BPIFA2
Genetics Home Reference (NIH)BPIFA2
Genomic and cartography
GoldenPath hg38 (UCSC)BPIFA2  -     chr20:33168159-33181412 +  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BPIFA2  -     20q11.21   [Description]    (hg19-Feb_2009)
GoldenPathBPIFA2 - 20q11.21 [CytoView hg19]  BPIFA2 - 20q11.21 [CytoView hg38]
ImmunoBaseENSG00000131050
genome Data Viewer NCBIBPIFA2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF432917 AK130543 AK130550 AK291854 AY359055
RefSeq transcript (Entrez)NM_001319164 NM_080574
Consensus coding sequences : CCDS (NCBI)BPIFA2
Alternative Splicing GalleryENSG00000131050
Gene ExpressionBPIFA2 [ NCBI-GEO ]   BPIFA2 [ EBI - ARRAY_EXPRESS ]   BPIFA2 [ SEEK ]   BPIFA2 [ MEM ]
Gene Expression Viewer (FireBrowse)BPIFA2 [ Firebrowse - Broad ]
GenevisibleExpression of BPIFA2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140683
GTEX Portal (Tissue expression)BPIFA2
Human Protein AtlasENSG00000131050-BPIFA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DR5
PhosPhoSitePlusQ96DR5
Domains : Interpro (EBI)Bactericidal_perm-incr_a/b_dom    Lipid-bd_serum_glycop_N   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)   
Domain families : Pfam (NCBI)pfam01273   
Conserved Domain (NCBI)BPIFA2
SuperfamilyQ96DR5
AlphaFold pdb e-kbQ96DR5   
Human Protein Atlas [tissue]ENSG00000131050-BPIFA2 [tissue]
HPRD12781
Protein Interaction databases
DIP (DOE-UCLA)Q96DR5
IntAct (EBI)Q96DR5
BioGRIDBPIFA2
STRING (EMBL)BPIFA2
ZODIACBPIFA2
Ontologies - Pathways
QuickGOQ96DR5
Ontology : AmiGOlipopolysaccharide binding  lipopolysaccharide binding  protein binding  extracellular region  extracellular region  extracellular space  antimicrobial humoral response  secretory granule  defense response to bacterium  extracellular exosome  
Ontology : EGO-EBIlipopolysaccharide binding  lipopolysaccharide binding  protein binding  extracellular region  extracellular region  extracellular space  antimicrobial humoral response  secretory granule  defense response to bacterium  extracellular exosome  
NDEx NetworkBPIFA2
Atlas of Cancer Signalling NetworkBPIFA2
Wikipedia pathwaysBPIFA2
Orthology - Evolution
OrthoDB140683
GeneTree (enSembl)ENSG00000131050
Phylogenetic Trees/Animal Genes : TreeFamBPIFA2
Homologs : HomoloGeneBPIFA2
Homology/Alignments : Family Browser (UCSC)BPIFA2
Gene fusions - Rearrangements
Fusion : QuiverBPIFA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPIFA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPIFA2
dbVarBPIFA2
ClinVarBPIFA2
MonarchBPIFA2
1000_GenomesBPIFA2 
Exome Variant ServerBPIFA2
GNOMAD BrowserENSG00000131050
Varsome BrowserBPIFA2
Genomic Variants (DGV)BPIFA2 [DGVbeta]
DECIPHERBPIFA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBPIFA2 
Mutations
ICGC Data PortalBPIFA2 
TCGA Data PortalBPIFA2 
Broad Tumor PortalBPIFA2
OASIS PortalBPIFA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBPIFA2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBPIFA2
Mutations and Diseases : HGMDBPIFA2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutasearch BPIFA2
DgiDB (Drug Gene Interaction Database)BPIFA2
DoCM (Curated mutations)BPIFA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPIFA2 (select a term)
Cancer3DBPIFA2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBPIFA2
MedgenBPIFA2
Genetic Testing Registry BPIFA2
NextProtQ96DR5 [Medical]
GENETestsBPIFA2
Target ValidationBPIFA2
Huge Navigator BPIFA2 [HugePedia]
ClinGenBPIFA2
Clinical trials, drugs, therapy
MyCancerGenomeBPIFA2
Protein Interactions : CTDBPIFA2
Pharm GKB GenePA25781
PharosQ96DR5
Clinical trialBPIFA2
Miscellaneous
canSAR (ICR)BPIFA2
HarmonizomeBPIFA2
DataMed IndexBPIFA2
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBPIFA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Sep 15 22:49:26 CEST 2021

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