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BPIFA3 (BPI fold containing family A, member 3)

Identity

Alias_namesC20orf71
chromosome 20 open reading frame 71
Alias_symbol (synonym)bA49G10.4
SPLUNC3
Other alias
HGNC (Hugo) BPIFA3
LocusID (NCBI) 128861
Atlas_Id 60793
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31805116 and ends at 31815612 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPIFA3   16204
Cards
Entrez_Gene (NCBI)BPIFA3  128861  BPI fold containing family A, member 3
AliasesC20orf71; SPLUNC3
GeneCards (Weizmann)BPIFA3
Ensembl hg19 (Hinxton)ENSG00000131059 [Gene_View]  chr20:31805116-31815612 [Contig_View]  BPIFA3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131059 [Gene_View]  chr20:31805116-31815612 [Contig_View]  BPIFA3 [Vega]
ICGC DataPortalENSG00000131059
TCGA cBioPortalBPIFA3
AceView (NCBI)BPIFA3
Genatlas (Paris)BPIFA3
WikiGenes128861
SOURCE (Princeton)BPIFA3
Genetics Home Reference (NIH)BPIFA3
Genomic and cartography
GoldenPath hg19 (UCSC)BPIFA3  -     chr20:31805116-31815612 +  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BPIFA3  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblBPIFA3 - 20q11.21 [CytoView hg19]  BPIFA3 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIBPIFA3 [Mapview hg19]  BPIFA3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI073399 AI638623 AW082233 BC041904 BC066354
RefSeq transcript (Entrez)NM_001042439 NM_178466
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)BPIFA3
Cluster EST : UnigeneHs.360989 [ NCBI ]
CGAP (NCI)Hs.360989
Alternative Splicing GalleryENSG00000131059
Gene ExpressionBPIFA3 [ NCBI-GEO ]   BPIFA3 [ EBI - ARRAY_EXPRESS ]   BPIFA3 [ SEEK ]   BPIFA3 [ MEM ]
Gene Expression Viewer (FireBrowse)BPIFA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128861
GTEX Portal (Tissue expression)BPIFA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQP9
Splice isoforms : SwissVarQ9BQP9
PhosPhoSitePlusQ9BQP9
Domains : Interpro (EBI)Bactericidal_perm-incr_a/b_dom    Lipid-bd_serum_glycop_N   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)   
Domain families : Pfam (NCBI)pfam01273   
Conserved Domain (NCBI)BPIFA3
DMDM Disease mutations128861
Blocks (Seattle)BPIFA3
SuperfamilyQ9BQP9
Human Protein AtlasENSG00000131059
Peptide AtlasQ9BQP9
HPRD12782
IPIIPI00150189   IPI00433811   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQP9
IntAct (EBI)Q9BQP9
FunCoupENSG00000131059
BioGRIDBPIFA3
STRING (EMBL)BPIFA3
ZODIACBPIFA3
Ontologies - Pathways
QuickGOQ9BQP9
Ontology : AmiGOextracellular region  lipid binding  
Ontology : EGO-EBIextracellular region  lipid binding  
NDEx NetworkBPIFA3
Atlas of Cancer Signalling NetworkBPIFA3
Wikipedia pathwaysBPIFA3
Orthology - Evolution
OrthoDB128861
GeneTree (enSembl)ENSG00000131059
Phylogenetic Trees/Animal Genes : TreeFamBPIFA3
HOVERGENQ9BQP9
HOGENOMQ9BQP9
Homologs : HomoloGeneBPIFA3
Homology/Alignments : Family Browser (UCSC)BPIFA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPIFA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPIFA3
dbVarBPIFA3
ClinVarBPIFA3
1000_GenomesBPIFA3 
Exome Variant ServerBPIFA3
ExAC (Exome Aggregation Consortium)BPIFA3 (select the gene name)
Genetic variants : HAPMAP128861
Genomic Variants (DGV)BPIFA3 [DGVbeta]
DECIPHER (Syndromes)20:31805116-31815612  ENSG00000131059
CONAN: Copy Number AnalysisBPIFA3 
Mutations
ICGC Data PortalBPIFA3 
TCGA Data PortalBPIFA3 
Broad Tumor PortalBPIFA3
OASIS PortalBPIFA3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBPIFA3
BioMutasearch BPIFA3
DgiDB (Drug Gene Interaction Database)BPIFA3
DoCM (Curated mutations)BPIFA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPIFA3 (select a term)
intoGenBPIFA3
Cancer3DBPIFA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBPIFA3
Genetic Testing Registry BPIFA3
NextProtQ9BQP9 [Medical]
TSGene128861
GENETestsBPIFA3
Huge Navigator BPIFA3 [HugePedia]
snp3D : Map Gene to Disease128861
BioCentury BCIQBPIFA3
ClinGenBPIFA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128861
Chemical/Pharm GKB GenePA25782
Clinical trialBPIFA3
Miscellaneous
canSAR (ICR)BPIFA3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPIFA3
EVEXBPIFA3
GoPubMedBPIFA3
iHOPBPIFA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:00 CET 2017

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