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BPIFA4P (BPI fold containing family A member 4, pseudogene)

Identity

Alias_symbol (synonym)BASE
Other alias
HGNC (Hugo) BPIFA4P
LocusID (NCBI) 317716
Atlas_Id 52353
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 33193605 and ends at 33210462 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPIFA4P   20469
Cards
Entrez_Gene (NCBI)BPIFA4P  317716  BPI fold containing family A member 4, pseudogene
AliasesBASE
GeneCards (Weizmann)BPIFA4P
Ensembl hg19 (Hinxton)ENSG00000183566 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183566 [Gene_View]  chr20:33193605-33210462 [Contig_View]  BPIFA4P [Vega]
ICGC DataPortalENSG00000183566
TCGA cBioPortalBPIFA4P
AceView (NCBI)BPIFA4P
Genatlas (Paris)BPIFA4P
WikiGenes317716
SOURCE (Princeton)BPIFA4P
Genetics Home Reference (NIH)BPIFA4P
Genomic and cartography
GoldenPath hg38 (UCSC)BPIFA4P  -     chr20:33193605-33210462 +  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BPIFA4P  -     20q11.21   [Description]    (hg19-Feb_2009)
EnsemblBPIFA4P - 20q11.21 [CytoView hg19]  BPIFA4P - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIBPIFA4P [Mapview hg19]  BPIFA4P [Mapview hg38]
OMIM607627   
Gene and transcription
Genbank (Entrez)AY180924 AY389991 AY389992 BC069128 BC069315
RefSeq transcript (Entrez)NM_173859
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BPIFA4P
Cluster EST : UnigeneHs.434194 [ NCBI ]
CGAP (NCI)Hs.434194
Alternative Splicing GalleryENSG00000183566
Gene ExpressionBPIFA4P [ NCBI-GEO ]   BPIFA4P [ EBI - ARRAY_EXPRESS ]   BPIFA4P [ SEEK ]   BPIFA4P [ MEM ]
Gene Expression Viewer (FireBrowse)BPIFA4P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317716
GTEX Portal (Tissue expression)BPIFA4P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YQ2
Splice isoforms : SwissVarQ86YQ2
PhosPhoSitePlusQ86YQ2
Domains : Interpro (EBI)BPI/LBP/Plunc    Latherin    Lipid-bd_serum_glycop_N   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)   
Domain families : Pfam (NCBI)pfam01273   
Conserved Domain (NCBI)BPIFA4P
DMDM Disease mutations317716
Blocks (Seattle)BPIFA4P
SuperfamilyQ86YQ2
Human Protein AtlasENSG00000183566
Peptide AtlasQ86YQ2
HPRD06359
IPIIPI00329422   
Protein Interaction databases
DIP (DOE-UCLA)Q86YQ2
IntAct (EBI)Q86YQ2
FunCoupENSG00000183566
BioGRIDBPIFA4P
STRING (EMBL)BPIFA4P
ZODIACBPIFA4P
Ontologies - Pathways
QuickGOQ86YQ2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkBPIFA4P
Atlas of Cancer Signalling NetworkBPIFA4P
Wikipedia pathwaysBPIFA4P
Orthology - Evolution
OrthoDB317716
GeneTree (enSembl)ENSG00000183566
Phylogenetic Trees/Animal Genes : TreeFamBPIFA4P
HOVERGENQ86YQ2
HOGENOMQ86YQ2
Homologs : HomoloGeneBPIFA4P
Homology/Alignments : Family Browser (UCSC)BPIFA4P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPIFA4P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPIFA4P
dbVarBPIFA4P
ClinVarBPIFA4P
1000_GenomesBPIFA4P 
Exome Variant ServerBPIFA4P
ExAC (Exome Aggregation Consortium)BPIFA4P (select the gene name)
Genetic variants : HAPMAP317716
Genomic Variants (DGV)BPIFA4P [DGVbeta]
DECIPHERBPIFA4P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBPIFA4P 
Mutations
ICGC Data PortalBPIFA4P 
TCGA Data PortalBPIFA4P 
Broad Tumor PortalBPIFA4P
OASIS PortalBPIFA4P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBPIFA4P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BPIFA4P
DgiDB (Drug Gene Interaction Database)BPIFA4P
DoCM (Curated mutations)BPIFA4P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPIFA4P (select a term)
intoGenBPIFA4P
Cancer3DBPIFA4P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607627   
Orphanet
MedgenBPIFA4P
Genetic Testing Registry BPIFA4P
NextProtQ86YQ2 [Medical]
TSGene317716
GENETestsBPIFA4P
Target ValidationBPIFA4P
Huge Navigator BPIFA4P [HugePedia]
snp3D : Map Gene to Disease317716
BioCentury BCIQBPIFA4P
ClinGenBPIFA4P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD317716
Clinical trialBPIFA4P
Miscellaneous
canSAR (ICR)BPIFA4P (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPIFA4P
EVEXBPIFA4P
GoPubMedBPIFA4P
iHOPBPIFA4P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:25:43 CEST 2017

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