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BPIFB2 (BPI fold containing family B member 2)

Identity

Alias_namesC20orf184
BPIL1
bactericidal/permeability-increasing protein-like 1
Alias_symbol (synonym)dJ726C3.2
LPLUNC2
Other aliasRYSR
HGNC (Hugo) BPIFB2
LocusID (NCBI) 80341
Atlas_Id 827
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31595384 and ends at 31611515 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPIFB2   16177
Cards
Entrez_Gene (NCBI)BPIFB2  80341  BPI fold containing family B member 2
AliasesBPIL1; C20orf184; LPLUNC2; RYSR; 
dJ726C3.2
GeneCards (Weizmann)BPIFB2
Ensembl hg19 (Hinxton)ENSG00000078898 [Gene_View]  chr20:31595384-31611515 [Contig_View]  BPIFB2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000078898 [Gene_View]  chr20:31595384-31611515 [Contig_View]  BPIFB2 [Vega]
ICGC DataPortalENSG00000078898
TCGA cBioPortalBPIFB2
AceView (NCBI)BPIFB2
Genatlas (Paris)BPIFB2
WikiGenes80341
SOURCE (Princeton)BPIFB2
Genetics Home Reference (NIH)BPIFB2
Genomic and cartography
GoldenPath hg19 (UCSC)BPIFB2  -     chr20:31595384-31611515 +  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BPIFB2  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblBPIFB2 - 20q11.21 [CytoView hg19]  BPIFB2 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIBPIFB2 [Mapview hg19]  BPIFB2 [Mapview hg38]
OMIM614108   
Gene and transcription
Genbank (Entrez)AF465765 AK027068 AK172819 AK304064 AY358723
RefSeq transcript (Entrez)NM_025227
RefSeq genomic (Entrez)NC_000020 NC_018931 NG_016714 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)BPIFB2
Cluster EST : UnigeneHs.257045 [ NCBI ]
CGAP (NCI)Hs.257045
Alternative Splicing GalleryENSG00000078898
Gene ExpressionBPIFB2 [ NCBI-GEO ]   BPIFB2 [ EBI - ARRAY_EXPRESS ]   BPIFB2 [ SEEK ]   BPIFB2 [ MEM ]
Gene Expression Viewer (FireBrowse)BPIFB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80341
GTEX Portal (Tissue expression)BPIFB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4F0
Splice isoforms : SwissVarQ8N4F0
PhosPhoSitePlusQ8N4F0
Domains : Interpro (EBI)Bactericidal_perm-incr_a/b_dom    BPI/LBP    BPI/LBP/Plunc    Lipid-bd_serum_glycop_C    Lipid-bd_serum_glycop_N   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)    LBP_BPI_CETP_C (PF02886)   
Domain families : Pfam (NCBI)pfam01273    pfam02886   
Domain families : Smart (EMBL)BPI2 (SM00329)  
Conserved Domain (NCBI)BPIFB2
DMDM Disease mutations80341
Blocks (Seattle)BPIFB2
SuperfamilyQ8N4F0
Human Protein AtlasENSG00000078898
Peptide AtlasQ8N4F0
HPRD10690
IPIIPI00296654   IPI00910477   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4F0
IntAct (EBI)Q8N4F0
FunCoupENSG00000078898
BioGRIDBPIFB2
STRING (EMBL)BPIFB2
ZODIACBPIFB2
Ontologies - Pathways
QuickGOQ8N4F0
Ontology : AmiGOextracellular space  lipid binding  extracellular exosome  
Ontology : EGO-EBIextracellular space  lipid binding  extracellular exosome  
NDEx NetworkBPIFB2
Atlas of Cancer Signalling NetworkBPIFB2
Wikipedia pathwaysBPIFB2
Orthology - Evolution
OrthoDB80341
GeneTree (enSembl)ENSG00000078898
Phylogenetic Trees/Animal Genes : TreeFamBPIFB2
HOVERGENQ8N4F0
HOGENOMQ8N4F0
Homologs : HomoloGeneBPIFB2
Homology/Alignments : Family Browser (UCSC)BPIFB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPIFB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPIFB2
dbVarBPIFB2
ClinVarBPIFB2
1000_GenomesBPIFB2 
Exome Variant ServerBPIFB2
ExAC (Exome Aggregation Consortium)BPIFB2 (select the gene name)
Genetic variants : HAPMAP80341
Genomic Variants (DGV)BPIFB2 [DGVbeta]
DECIPHER (Syndromes)20:31595384-31611515  ENSG00000078898
CONAN: Copy Number AnalysisBPIFB2 
Mutations
ICGC Data PortalBPIFB2 
TCGA Data PortalBPIFB2 
Broad Tumor PortalBPIFB2
OASIS PortalBPIFB2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBPIFB2
BioMutasearch BPIFB2
DgiDB (Drug Gene Interaction Database)BPIFB2
DoCM (Curated mutations)BPIFB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPIFB2 (select a term)
intoGenBPIFB2
Cancer3DBPIFB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614108   
Orphanet
MedgenBPIFB2
Genetic Testing Registry BPIFB2
NextProtQ8N4F0 [Medical]
TSGene80341
GENETestsBPIFB2
Huge Navigator BPIFB2 [HugePedia]
snp3D : Map Gene to Disease80341
BioCentury BCIQBPIFB2
ClinGenBPIFB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80341
Chemical/Pharm GKB GenePA25404
Clinical trialBPIFB2
Miscellaneous
canSAR (ICR)BPIFB2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPIFB2
EVEXBPIFB2
GoPubMedBPIFB2
iHOPBPIFB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:57:46 CET 2017

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