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BPIFB3 (BPI fold containing family B member 3)

Identity

Alias_namesC20orf185
chromosome 20 open reading frame 185
Alias_symbol (synonym)dJ726C3.4
LPLUNC3
RYA3
Other alias
HGNC (Hugo) BPIFB3
LocusID (NCBI) 359710
Atlas_Id 60794
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 33055331 and ends at 33073637 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPIFB3   16178
Cards
Entrez_Gene (NCBI)BPIFB3  359710  BPI fold containing family B member 3
AliasesC20orf185; LPLUNC3; RYA3
GeneCards (Weizmann)BPIFB3
Ensembl hg19 (Hinxton)ENSG00000186190 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186190 [Gene_View]  chr20:33055331-33073637 [Contig_View]  BPIFB3 [Vega]
ICGC DataPortalENSG00000186190
TCGA cBioPortalBPIFB3
AceView (NCBI)BPIFB3
Genatlas (Paris)BPIFB3
WikiGenes359710
SOURCE (Princeton)BPIFB3
Genetics Home Reference (NIH)BPIFB3
Genomic and cartography
GoldenPath hg38 (UCSC)BPIFB3  -     chr20:33055331-33073637 +  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BPIFB3  -     20q11.21   [Description]    (hg19-Feb_2009)
EnsemblBPIFB3 - 20q11.21 [CytoView hg19]  BPIFB3 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIBPIFB3 [Mapview hg19]  BPIFB3 [Mapview hg38]
OMIM615717   
Gene and transcription
Genbank (Entrez)AF549189 BC113398 BC113400 HQ258440
RefSeq transcript (Entrez)NM_182658
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BPIFB3
Cluster EST : UnigeneHs.472442 [ NCBI ]
CGAP (NCI)Hs.472442
Alternative Splicing GalleryENSG00000186190
Gene ExpressionBPIFB3 [ NCBI-GEO ]   BPIFB3 [ EBI - ARRAY_EXPRESS ]   BPIFB3 [ SEEK ]   BPIFB3 [ MEM ]
Gene Expression Viewer (FireBrowse)BPIFB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)359710
GTEX Portal (Tissue expression)BPIFB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59826   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59826  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59826
Splice isoforms : SwissVarP59826
PhosPhoSitePlusP59826
Domains : Interpro (EBI)Bactericidal_perm-incr_a/b_dom    BPI/LBP/Plunc    BPIFB3    Lipid-bd_serum_glycop_C    Lipid-bd_serum_glycop_N   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)    LBP_BPI_CETP_C (PF02886)   
Domain families : Pfam (NCBI)pfam01273    pfam02886   
Domain families : Smart (EMBL)BPI1 (SM00328)  BPI2 (SM00329)  
Conserved Domain (NCBI)BPIFB3
DMDM Disease mutations359710
Blocks (Seattle)BPIFB3
SuperfamilyP59826
Human Protein AtlasENSG00000186190
Peptide AtlasP59826
HPRD16644
IPIIPI00339366   
Protein Interaction databases
DIP (DOE-UCLA)P59826
IntAct (EBI)P59826
FunCoupENSG00000186190
BioGRIDBPIFB3
STRING (EMBL)BPIFB3
ZODIACBPIFB3
Ontologies - Pathways
QuickGOP59826
Ontology : AmiGOextracellular region  cytoplasm  lipid binding  innate immune response  
Ontology : EGO-EBIextracellular region  cytoplasm  lipid binding  innate immune response  
NDEx NetworkBPIFB3
Atlas of Cancer Signalling NetworkBPIFB3
Wikipedia pathwaysBPIFB3
Orthology - Evolution
OrthoDB359710
GeneTree (enSembl)ENSG00000186190
Phylogenetic Trees/Animal Genes : TreeFamBPIFB3
HOVERGENP59826
HOGENOMP59826
Homologs : HomoloGeneBPIFB3
Homology/Alignments : Family Browser (UCSC)BPIFB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPIFB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPIFB3
dbVarBPIFB3
ClinVarBPIFB3
1000_GenomesBPIFB3 
Exome Variant ServerBPIFB3
ExAC (Exome Aggregation Consortium)BPIFB3 (select the gene name)
Genetic variants : HAPMAP359710
Genomic Variants (DGV)BPIFB3 [DGVbeta]
DECIPHERBPIFB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBPIFB3 
Mutations
ICGC Data PortalBPIFB3 
TCGA Data PortalBPIFB3 
Broad Tumor PortalBPIFB3
OASIS PortalBPIFB3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBPIFB3
BioMutasearch BPIFB3
DgiDB (Drug Gene Interaction Database)BPIFB3
DoCM (Curated mutations)BPIFB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPIFB3 (select a term)
intoGenBPIFB3
Cancer3DBPIFB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615717   
Orphanet
MedgenBPIFB3
Genetic Testing Registry BPIFB3
NextProtP59826 [Medical]
TSGene359710
GENETestsBPIFB3
Target ValidationBPIFB3
Huge Navigator BPIFB3 [HugePedia]
snp3D : Map Gene to Disease359710
BioCentury BCIQBPIFB3
ClinGenBPIFB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD359710
Chemical/Pharm GKB GenePA25727
Clinical trialBPIFB3
Miscellaneous
canSAR (ICR)BPIFB3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPIFB3
EVEXBPIFB3
GoPubMedBPIFB3
iHOPBPIFB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:50 CEST 2017

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