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BPIFB4 (BPI fold containing family B, member 4)

Identity

Alias_namesC20orf186
chromosome 20 open reading frame 186
Alias_symbol (synonym)dJ726C3.5
LPLUNC4
Other aliasRY2G5
HGNC (Hugo) BPIFB4
LocusID (NCBI) 149954
Atlas_Id 60795
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31669318 and ends at 31699557 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SNAPC5 (15q22.31) / BPIFB4 (20q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPIFB4   16179
Cards
Entrez_Gene (NCBI)BPIFB4  149954  BPI fold containing family B, member 4
AliasesC20orf186; LPLUNC4; RY2G5; dJ726C3.5
GeneCards (Weizmann)BPIFB4
Ensembl hg19 (Hinxton)ENSG00000186191 [Gene_View]  chr20:31669318-31699557 [Contig_View]  BPIFB4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186191 [Gene_View]  chr20:31669318-31699557 [Contig_View]  BPIFB4 [Vega]
ICGC DataPortalENSG00000186191
TCGA cBioPortalBPIFB4
AceView (NCBI)BPIFB4
Genatlas (Paris)BPIFB4
WikiGenes149954
SOURCE (Princeton)BPIFB4
Genetics Home Reference (NIH)BPIFB4
Genomic and cartography
GoldenPath hg19 (UCSC)BPIFB4  -     chr20:31669318-31699557 +  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BPIFB4  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblBPIFB4 - 20q11.21 [CytoView hg19]  BPIFB4 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIBPIFB4 [Mapview hg19]  BPIFB4 [Mapview hg38]
OMIM615718   
Gene and transcription
Genbank (Entrez)AF549190 BC140293 BC146505
RefSeq transcript (Entrez)NM_182519
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)BPIFB4
Cluster EST : UnigeneHs.38961 [ NCBI ]
CGAP (NCI)Hs.38961
Alternative Splicing GalleryENSG00000186191
Gene ExpressionBPIFB4 [ NCBI-GEO ]   BPIFB4 [ EBI - ARRAY_EXPRESS ]   BPIFB4 [ SEEK ]   BPIFB4 [ MEM ]
Gene Expression Viewer (FireBrowse)BPIFB4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149954
GTEX Portal (Tissue expression)BPIFB4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59827   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59827  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59827
Splice isoforms : SwissVarP59827
PhosPhoSitePlusP59827
Domains : Interpro (EBI)Bactericidal_perm-incr_a/b_dom    Lipid-bd_serum_glycop_C    Lipid-bd_serum_glycop_N   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)    LBP_BPI_CETP_C (PF02886)   
Domain families : Pfam (NCBI)pfam01273    pfam02886   
Domain families : Smart (EMBL)BPI1 (SM00328)  BPI2 (SM00329)  
Conserved Domain (NCBI)BPIFB4
DMDM Disease mutations149954
Blocks (Seattle)BPIFB4
SuperfamilyP59827
Human Protein AtlasENSG00000186191
Peptide AtlasP59827
HPRD16645
IPIIPI00339367   IPI00941325   IPI00925906   
Protein Interaction databases
DIP (DOE-UCLA)P59827
IntAct (EBI)P59827
FunCoupENSG00000186191
BioGRIDBPIFB4
STRING (EMBL)BPIFB4
ZODIACBPIFB4
Ontologies - Pathways
QuickGOP59827
Ontology : AmiGOextracellular region  cytoplasm  lipid binding  
Ontology : EGO-EBIextracellular region  cytoplasm  lipid binding  
NDEx NetworkBPIFB4
Atlas of Cancer Signalling NetworkBPIFB4
Wikipedia pathwaysBPIFB4
Orthology - Evolution
OrthoDB149954
GeneTree (enSembl)ENSG00000186191
Phylogenetic Trees/Animal Genes : TreeFamBPIFB4
HOVERGENP59827
HOGENOMP59827
Homologs : HomoloGeneBPIFB4
Homology/Alignments : Family Browser (UCSC)BPIFB4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPIFB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPIFB4
dbVarBPIFB4
ClinVarBPIFB4
1000_GenomesBPIFB4 
Exome Variant ServerBPIFB4
ExAC (Exome Aggregation Consortium)BPIFB4 (select the gene name)
Genetic variants : HAPMAP149954
Genomic Variants (DGV)BPIFB4 [DGVbeta]
DECIPHER (Syndromes)20:31669318-31699557  ENSG00000186191
CONAN: Copy Number AnalysisBPIFB4 
Mutations
ICGC Data PortalBPIFB4 
TCGA Data PortalBPIFB4 
Broad Tumor PortalBPIFB4
OASIS PortalBPIFB4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBPIFB4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBPIFB4
BioMutasearch BPIFB4
DgiDB (Drug Gene Interaction Database)BPIFB4
DoCM (Curated mutations)BPIFB4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPIFB4 (select a term)
intoGenBPIFB4
Cancer3DBPIFB4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615718   
Orphanet
MedgenBPIFB4
Genetic Testing Registry BPIFB4
NextProtP59827 [Medical]
TSGene149954
GENETestsBPIFB4
Huge Navigator BPIFB4 [HugePedia]
snp3D : Map Gene to Disease149954
BioCentury BCIQBPIFB4
ClinGenBPIFB4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149954
Chemical/Pharm GKB GenePA25728
Clinical trialBPIFB4
Miscellaneous
canSAR (ICR)BPIFB4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPIFB4
EVEXBPIFB4
GoPubMedBPIFB4
iHOPBPIFB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:00 CET 2017

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