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BPIFB6 (BPI fold containing family B, member 6)

Identity

Alias_namesBPIL3
bactericidal/permeability-increasing protein-like 3
Alias_symbol (synonym)LPLUNC6
Other alias
HGNC (Hugo) BPIFB6
LocusID (NCBI) 128859
Atlas_Id 60796
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31619454 and ends at 31631853 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPIFB6   16504
Cards
Entrez_Gene (NCBI)BPIFB6  128859  BPI fold containing family B, member 6
AliasesBPIL3; LPLUNC6
GeneCards (Weizmann)BPIFB6
Ensembl hg19 (Hinxton)ENSG00000167104 [Gene_View]  chr20:31619454-31631853 [Contig_View]  BPIFB6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167104 [Gene_View]  chr20:31619454-31631853 [Contig_View]  BPIFB6 [Vega]
ICGC DataPortalENSG00000167104
TCGA cBioPortalBPIFB6
AceView (NCBI)BPIFB6
Genatlas (Paris)BPIFB6
WikiGenes128859
SOURCE (Princeton)BPIFB6
Genetics Home Reference (NIH)BPIFB6
Genomic and cartography
GoldenPath hg19 (UCSC)BPIFB6  -     chr20:31619454-31631853 +  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BPIFB6  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblBPIFB6 - 20q11.21 [CytoView hg19]  BPIFB6 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIBPIFB6 [Mapview hg19]  BPIFB6 [Mapview hg38]
OMIM614110   
Gene and transcription
Genbank (Entrez)AF465767 AY927631 BC113122 BC140306 BC146464
RefSeq transcript (Entrez)NM_174897
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)BPIFB6
Cluster EST : UnigeneHs.375090 [ NCBI ]
CGAP (NCI)Hs.375090
Alternative Splicing GalleryENSG00000167104
Gene ExpressionBPIFB6 [ NCBI-GEO ]   BPIFB6 [ EBI - ARRAY_EXPRESS ]   BPIFB6 [ SEEK ]   BPIFB6 [ MEM ]
Gene Expression Viewer (FireBrowse)BPIFB6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128859
GTEX Portal (Tissue expression)BPIFB6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFQ5
Splice isoforms : SwissVarQ8NFQ5
PhosPhoSitePlusQ8NFQ5
Domains : Interpro (EBI)Bactericidal_perm-incr_a/b_dom    Lipid-bd_serum_glycop_C    Lipid-bd_serum_glycop_N   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)    LBP_BPI_CETP_C (PF02886)   
Domain families : Pfam (NCBI)pfam01273    pfam02886   
Domain families : Smart (EMBL)BPI1 (SM00328)  BPI2 (SM00329)  
Conserved Domain (NCBI)BPIFB6
DMDM Disease mutations128859
Blocks (Seattle)BPIFB6
SuperfamilyQ8NFQ5
Human Protein AtlasENSG00000167104
Peptide AtlasQ8NFQ5
HPRD16561
IPIIPI00414328   IPI01009891   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFQ5
IntAct (EBI)Q8NFQ5
FunCoupENSG00000167104
BioGRIDBPIFB6
STRING (EMBL)BPIFB6
ZODIACBPIFB6
Ontologies - Pathways
QuickGOQ8NFQ5
Ontology : AmiGOextracellular region  lipid binding  
Ontology : EGO-EBIextracellular region  lipid binding  
NDEx NetworkBPIFB6
Atlas of Cancer Signalling NetworkBPIFB6
Wikipedia pathwaysBPIFB6
Orthology - Evolution
OrthoDB128859
GeneTree (enSembl)ENSG00000167104
Phylogenetic Trees/Animal Genes : TreeFamBPIFB6
HOVERGENQ8NFQ5
HOGENOMQ8NFQ5
Homologs : HomoloGeneBPIFB6
Homology/Alignments : Family Browser (UCSC)BPIFB6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPIFB6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPIFB6
dbVarBPIFB6
ClinVarBPIFB6
1000_GenomesBPIFB6 
Exome Variant ServerBPIFB6
ExAC (Exome Aggregation Consortium)BPIFB6 (select the gene name)
Genetic variants : HAPMAP128859
Genomic Variants (DGV)BPIFB6 [DGVbeta]
DECIPHER (Syndromes)20:31619454-31631853  ENSG00000167104
CONAN: Copy Number AnalysisBPIFB6 
Mutations
ICGC Data PortalBPIFB6 
TCGA Data PortalBPIFB6 
Broad Tumor PortalBPIFB6
OASIS PortalBPIFB6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBPIFB6
BioMutasearch BPIFB6
DgiDB (Drug Gene Interaction Database)BPIFB6
DoCM (Curated mutations)BPIFB6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPIFB6 (select a term)
intoGenBPIFB6
Cancer3DBPIFB6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614110   
Orphanet
MedgenBPIFB6
Genetic Testing Registry BPIFB6
NextProtQ8NFQ5 [Medical]
TSGene128859
GENETestsBPIFB6
Huge Navigator BPIFB6 [HugePedia]
snp3D : Map Gene to Disease128859
BioCentury BCIQBPIFB6
ClinGenBPIFB6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128859
Chemical/Pharm GKB GenePA25406
Clinical trialBPIFB6
Miscellaneous
canSAR (ICR)BPIFB6 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPIFB6
EVEXBPIFB6
GoPubMedBPIFB6
iHOPBPIFB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:00 CET 2017

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