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BPIFC (BPI fold containing family C)

Identity

Alias_namesBPIL2
bactericidal/permeability-increasing protein-like 2
Alias_symbol (synonym)dJ149A16.7
Other alias
HGNC (Hugo) BPIFC
LocusID (NCBI) 254240
Atlas_Id 60797
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 32413847 and ends at 32457386 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPIFC   16503
Cards
Entrez_Gene (NCBI)BPIFC  254240  BPI fold containing family C
AliasesBPIL2
GeneCards (Weizmann)BPIFC
Ensembl hg19 (Hinxton)ENSG00000184459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184459 [Gene_View]  chr22:32413847-32457386 [Contig_View]  BPIFC [Vega]
ICGC DataPortalENSG00000184459
TCGA cBioPortalBPIFC
AceView (NCBI)BPIFC
Genatlas (Paris)BPIFC
WikiGenes254240
SOURCE (Princeton)BPIFC
Genetics Home Reference (NIH)BPIFC
Genomic and cartography
GoldenPath hg38 (UCSC)BPIFC  -     chr22:32413847-32457386 -  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BPIFC  -     22q12.3   [Description]    (hg19-Feb_2009)
EnsemblBPIFC - 22q12.3 [CytoView hg19]  BPIFC - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIBPIFC [Mapview hg19]  BPIFC [Mapview hg38]
OMIM614109   
Gene and transcription
Genbank (Entrez)AF465766 AK301685 BC062656 BC131582 CK823453
RefSeq transcript (Entrez)NM_174932
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BPIFC
Cluster EST : UnigeneHs.736771 [ NCBI ]
CGAP (NCI)Hs.736771
Alternative Splicing GalleryENSG00000184459
Gene ExpressionBPIFC [ NCBI-GEO ]   BPIFC [ EBI - ARRAY_EXPRESS ]   BPIFC [ SEEK ]   BPIFC [ MEM ]
Gene Expression Viewer (FireBrowse)BPIFC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254240
GTEX Portal (Tissue expression)BPIFC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFQ6
Splice isoforms : SwissVarQ8NFQ6
PhosPhoSitePlusQ8NFQ6
Domaine pattern : Prosite (Expaxy)LBP_BPI_CETP (PS00400)   
Domains : Interpro (EBI)Bactericidal_perm-incr_a/b_dom    BPI/LBP    BPI/LBP/Plunc    BPIFC    Lipid-bd_serum_glycop_C    Lipid-bd_serum_glycop_CS    Lipid-bd_serum_glycop_N   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)    LBP_BPI_CETP_C (PF02886)   
Domain families : Pfam (NCBI)pfam01273    pfam02886   
Domain families : Smart (EMBL)BPI1 (SM00328)  BPI2 (SM00329)  
Conserved Domain (NCBI)BPIFC
DMDM Disease mutations254240
Blocks (Seattle)BPIFC
SuperfamilyQ8NFQ6
Human Protein AtlasENSG00000184459
Peptide AtlasQ8NFQ6
HPRD16560
IPIIPI00168874   IPI00829959   IPI01009659   IPI00640139   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFQ6
IntAct (EBI)Q8NFQ6
FunCoupENSG00000184459
BioGRIDBPIFC
STRING (EMBL)BPIFC
ZODIACBPIFC
Ontologies - Pathways
QuickGOQ8NFQ6
Ontology : AmiGOlipopolysaccharide binding  phospholipid binding  extracellular space  
Ontology : EGO-EBIlipopolysaccharide binding  phospholipid binding  extracellular space  
NDEx NetworkBPIFC
Atlas of Cancer Signalling NetworkBPIFC
Wikipedia pathwaysBPIFC
Orthology - Evolution
OrthoDB254240
GeneTree (enSembl)ENSG00000184459
Phylogenetic Trees/Animal Genes : TreeFamBPIFC
HOVERGENQ8NFQ6
HOGENOMQ8NFQ6
Homologs : HomoloGeneBPIFC
Homology/Alignments : Family Browser (UCSC)BPIFC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPIFC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPIFC
dbVarBPIFC
ClinVarBPIFC
1000_GenomesBPIFC 
Exome Variant ServerBPIFC
ExAC (Exome Aggregation Consortium)BPIFC (select the gene name)
Genetic variants : HAPMAP254240
Genomic Variants (DGV)BPIFC [DGVbeta]
DECIPHERBPIFC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBPIFC 
Mutations
ICGC Data PortalBPIFC 
TCGA Data PortalBPIFC 
Broad Tumor PortalBPIFC
OASIS PortalBPIFC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBPIFC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBPIFC
BioMutasearch BPIFC
DgiDB (Drug Gene Interaction Database)BPIFC
DoCM (Curated mutations)BPIFC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPIFC (select a term)
intoGenBPIFC
Cancer3DBPIFC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614109   
Orphanet
MedgenBPIFC
Genetic Testing Registry BPIFC
NextProtQ8NFQ6 [Medical]
TSGene254240
GENETestsBPIFC
Target ValidationBPIFC
Huge Navigator BPIFC [HugePedia]
snp3D : Map Gene to Disease254240
BioCentury BCIQBPIFC
ClinGenBPIFC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254240
Chemical/Pharm GKB GenePA25405
Clinical trialBPIFC
Miscellaneous
canSAR (ICR)BPIFC (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPIFC
EVEXBPIFC
GoPubMedBPIFC
iHOPBPIFC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:26 CEST 2017

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