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BPNT1 (3'(2'), 5'-bisphosphate nucleotidase 1)

Identity

Other aliasHEL20
PIP
HGNC (Hugo) BPNT1
LocusID (NCBI) 10380
Atlas_Id 60798
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 220057482 and ends at 220089853 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPNT1   1096
Cards
Entrez_Gene (NCBI)BPNT1  10380  3'(2'), 5'-bisphosphate nucleotidase 1
AliasesHEL20; PIP
GeneCards (Weizmann)BPNT1
Ensembl hg19 (Hinxton)ENSG00000162813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162813 [Gene_View]  chr1:220057482-220089853 [Contig_View]  BPNT1 [Vega]
ICGC DataPortalENSG00000162813
TCGA cBioPortalBPNT1
AceView (NCBI)BPNT1
Genatlas (Paris)BPNT1
WikiGenes10380
SOURCE (Princeton)BPNT1
Genetics Home Reference (NIH)BPNT1
Genomic and cartography
GoldenPath hg38 (UCSC)BPNT1  -     chr1:220057482-220089853 -  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BPNT1  -     1q41   [Description]    (hg19-Feb_2009)
EnsemblBPNT1 - 1q41 [CytoView hg19]  BPNT1 - 1q41 [CytoView hg38]
Mapping of homologs : NCBIBPNT1 [Mapview hg19]  BPNT1 [Mapview hg38]
OMIM604053   
Gene and transcription
Genbank (Entrez)AF125042 AJ249339 AK021941 AK291943 AK298476
RefSeq transcript (Entrez)NM_001286149 NM_001286150 NM_001286151 NM_006085
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BPNT1
Cluster EST : UnigeneHs.406134 [ NCBI ]
CGAP (NCI)Hs.406134
Alternative Splicing GalleryENSG00000162813
Gene ExpressionBPNT1 [ NCBI-GEO ]   BPNT1 [ EBI - ARRAY_EXPRESS ]   BPNT1 [ SEEK ]   BPNT1 [ MEM ]
Gene Expression Viewer (FireBrowse)BPNT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10380
GTEX Portal (Tissue expression)BPNT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95861   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95861  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95861
Splice isoforms : SwissVarO95861
Catalytic activity : Enzyme3.1.3.7 [ Enzyme-Expasy ]   3.1.3.73.1.3.7 [ IntEnz-EBI ]   3.1.3.7 [ BRENDA ]   3.1.3.7 [ KEGG ]   
PhosPhoSitePlusO95861
Domaine pattern : Prosite (Expaxy)IMP_1 (PS00629)    IMP_2 (PS00630)   
Domains : Interpro (EBI)Inositol_monoP_metal-BS    Inositol_monophosphatase-like    Inositol_monophosphatase_CS   
Domain families : Pfam (Sanger)Inositol_P (PF00459)   
Domain families : Pfam (NCBI)pfam00459   
Conserved Domain (NCBI)BPNT1
DMDM Disease mutations10380
Blocks (Seattle)BPNT1
PDB (SRS)2WEF   
PDB (PDBSum)2WEF   
PDB (IMB)2WEF   
PDB (RSDB)2WEF   
Structural Biology KnowledgeBase2WEF   
SCOP (Structural Classification of Proteins)2WEF   
CATH (Classification of proteins structures)2WEF   
SuperfamilyO95861
Human Protein AtlasENSG00000162813
Peptide AtlasO95861
HPRD06814
IPIIPI00410214   IPI00410215   IPI01015329   IPI00910437   IPI00953320   IPI01018004   IPI01021773   IPI01021611   IPI01021481   IPI01021311   
Protein Interaction databases
DIP (DOE-UCLA)O95861
IntAct (EBI)O95861
FunCoupENSG00000162813
BioGRIDBPNT1
STRING (EMBL)BPNT1
ZODIACBPNT1
Ontologies - Pathways
QuickGOO95861
Ontology : AmiGOcytosol  nucleobase-containing compound metabolic process  nervous system development  3'(2'),5'-bisphosphate nucleotidase activity  dephosphorylation  phosphatidylinositol phosphorylation  metal ion binding  3'-phosphoadenosine 5'-phosphosulfate metabolic process  extracellular exosome  
Ontology : EGO-EBIcytosol  nucleobase-containing compound metabolic process  nervous system development  3'(2'),5'-bisphosphate nucleotidase activity  dephosphorylation  phosphatidylinositol phosphorylation  metal ion binding  3'-phosphoadenosine 5'-phosphosulfate metabolic process  extracellular exosome  
Pathways : KEGGSulfur metabolism   
NDEx NetworkBPNT1
Atlas of Cancer Signalling NetworkBPNT1
Wikipedia pathwaysBPNT1
Orthology - Evolution
OrthoDB10380
GeneTree (enSembl)ENSG00000162813
Phylogenetic Trees/Animal Genes : TreeFamBPNT1
HOVERGENO95861
HOGENOMO95861
Homologs : HomoloGeneBPNT1
Homology/Alignments : Family Browser (UCSC)BPNT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPNT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPNT1
dbVarBPNT1
ClinVarBPNT1
1000_GenomesBPNT1 
Exome Variant ServerBPNT1
ExAC (Exome Aggregation Consortium)BPNT1 (select the gene name)
Genetic variants : HAPMAP10380
Genomic Variants (DGV)BPNT1 [DGVbeta]
DECIPHERBPNT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBPNT1 
Mutations
ICGC Data PortalBPNT1 
TCGA Data PortalBPNT1 
Broad Tumor PortalBPNT1
OASIS PortalBPNT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBPNT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBPNT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BPNT1
DgiDB (Drug Gene Interaction Database)BPNT1
DoCM (Curated mutations)BPNT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPNT1 (select a term)
intoGenBPNT1
Cancer3DBPNT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604053   
Orphanet
MedgenBPNT1
Genetic Testing Registry BPNT1
NextProtO95861 [Medical]
TSGene10380
GENETestsBPNT1
Target ValidationBPNT1
Huge Navigator BPNT1 [HugePedia]
snp3D : Map Gene to Disease10380
BioCentury BCIQBPNT1
ClinGenBPNT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10380
Chemical/Pharm GKB GenePA25407
Clinical trialBPNT1
Miscellaneous
canSAR (ICR)BPNT1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPNT1
EVEXBPNT1
GoPubMedBPNT1
iHOPBPNT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:26 CEST 2017

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