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BPY2 (basic charge, Y-linked, 2)

Identity

Alias_namesVCY2
variable charge, Y-linked, 2
Alias_symbol (synonym)BPY2A
VCY2A
Other alias
HGNC (Hugo) BPY2
LocusID (NCBI) 9083
Atlas_Id 60799
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 22984263 and ends at 23005463 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPY2   13508
Cards
Entrez_Gene (NCBI)BPY2  9083  basic charge, Y-linked, 2
AliasesBPY2A; VCY2; VCY2A
GeneCards (Weizmann)BPY2
Ensembl hg19 (Hinxton)ENSG00000183753 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183753 [Gene_View]  chrY:22984263-23005463 [Contig_View]  BPY2 [Vega]
ICGC DataPortalENSG00000183753
TCGA cBioPortalBPY2
AceView (NCBI)BPY2
Genatlas (Paris)BPY2
WikiGenes9083
SOURCE (Princeton)BPY2
Genetics Home Reference (NIH)BPY2
Genomic and cartography
GoldenPath hg38 (UCSC)BPY2  -     chrY:22984263-23005463 +  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BPY2  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblBPY2 - Yq11.223 [CytoView hg19]  BPY2 - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIBPY2 [Mapview hg19]  BPY2 [Mapview hg38]
OMIM400013   415000   
Gene and transcription
Genbank (Entrez)AF000980
RefSeq transcript (Entrez)NM_004678
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BPY2
Cluster EST : UnigeneHs.664724 [ NCBI ]
CGAP (NCI)Hs.664724
Alternative Splicing GalleryENSG00000183753
Gene ExpressionBPY2 [ NCBI-GEO ]   BPY2 [ EBI - ARRAY_EXPRESS ]   BPY2 [ SEEK ]   BPY2 [ MEM ]
Gene Expression Viewer (FireBrowse)BPY2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9083
GTEX Portal (Tissue expression)BPY2
Human Protein AtlasENSG00000183753-BPY2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14599   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14599  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14599
Splice isoforms : SwissVarO14599
PhosPhoSitePlusO14599
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BPY2
DMDM Disease mutations9083
Blocks (Seattle)BPY2
SuperfamilyO14599
Human Protein Atlas [tissue]ENSG00000183753-BPY2 [tissue]
Peptide AtlasO14599
HPRD02454
IPIIPI00022529   
Protein Interaction databases
DIP (DOE-UCLA)O14599
IntAct (EBI)O14599
FunCoupENSG00000183753
BioGRIDBPY2
STRING (EMBL)BPY2
ZODIACBPY2
Ontologies - Pathways
QuickGOO14599
Ontology : AmiGOprotein binding  nucleus  spermatogenesis  single fertilization  HECT domain binding  
Ontology : EGO-EBIprotein binding  nucleus  spermatogenesis  single fertilization  HECT domain binding  
NDEx NetworkBPY2
Atlas of Cancer Signalling NetworkBPY2
Wikipedia pathwaysBPY2
Orthology - Evolution
OrthoDB9083
GeneTree (enSembl)ENSG00000183753
Phylogenetic Trees/Animal Genes : TreeFamBPY2
HOVERGENO14599
HOGENOMO14599
Homologs : HomoloGeneBPY2
Homology/Alignments : Family Browser (UCSC)BPY2
Gene fusions - Rearrangements
Tumor Fusion PortalBPY2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPY2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPY2
dbVarBPY2
ClinVarBPY2
1000_GenomesBPY2 
Exome Variant ServerBPY2
ExAC (Exome Aggregation Consortium)ENSG00000183753
GNOMAD BrowserENSG00000183753
Genetic variants : HAPMAP9083
Genomic Variants (DGV)BPY2 [DGVbeta]
DECIPHERBPY2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBPY2 
Mutations
ICGC Data PortalBPY2 
TCGA Data PortalBPY2 
Broad Tumor PortalBPY2
OASIS PortalBPY2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBPY2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBPY2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BPY2
DgiDB (Drug Gene Interaction Database)BPY2
DoCM (Curated mutations)BPY2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPY2 (select a term)
intoGenBPY2
Cancer3DBPY2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400013    415000   
Orphanet
DisGeNETBPY2
MedgenBPY2
Genetic Testing Registry BPY2
NextProtO14599 [Medical]
TSGene9083
GENETestsBPY2
Target ValidationBPY2
Huge Navigator BPY2 [HugePedia]
snp3D : Map Gene to Disease9083
BioCentury BCIQBPY2
ClinGenBPY2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9083
Chemical/Pharm GKB GenePA37794
Clinical trialBPY2
Miscellaneous
canSAR (ICR)BPY2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPY2
EVEXBPY2
GoPubMedBPY2
iHOPBPY2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:01:01 CET 2017

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