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BPY2B (basic charge, Y-linked, 2B)

Identity

Alias_symbol (synonym)VCY2B
Other alias
HGNC (Hugo) BPY2B
LocusID (NCBI) 442867
Atlas_Id 60800
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 22984263 and ends at 23005463 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPY2B   25449
Cards
Entrez_Gene (NCBI)BPY2B  442867  basic charge, Y-linked, 2B
AliasesVCY2B
GeneCards (Weizmann)BPY2B
Ensembl hg19 (Hinxton)ENSG00000183795 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183795 [Gene_View]  chrY:22984263-23005463 [Contig_View]  BPY2B [Vega]
ICGC DataPortalENSG00000183795
TCGA cBioPortalBPY2B
AceView (NCBI)BPY2B
Genatlas (Paris)BPY2B
WikiGenes442867
SOURCE (Princeton)BPY2B
Genetics Home Reference (NIH)BPY2B
Genomic and cartography
GoldenPath hg38 (UCSC)BPY2B  -     chrY:22984263-23005463 +  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BPY2B  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblBPY2B - Yq11.223 [CytoView hg19]  BPY2B - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIBPY2B [Mapview hg19]  BPY2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140267
RefSeq transcript (Entrez)NM_001002760
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BPY2B
Cluster EST : UnigeneHs.632848 [ NCBI ]
CGAP (NCI)Hs.632848
Alternative Splicing GalleryENSG00000183795
Gene ExpressionBPY2B [ NCBI-GEO ]   BPY2B [ EBI - ARRAY_EXPRESS ]   BPY2B [ SEEK ]   BPY2B [ MEM ]
Gene Expression Viewer (FireBrowse)BPY2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442867
GTEX Portal (Tissue expression)BPY2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14599   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14599  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14599
Splice isoforms : SwissVarO14599
PhosPhoSitePlusO14599
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BPY2B
DMDM Disease mutations442867
Blocks (Seattle)BPY2B
SuperfamilyO14599
Human Protein AtlasENSG00000183795
Peptide AtlasO14599
HPRD12530
Protein Interaction databases
DIP (DOE-UCLA)O14599
IntAct (EBI)O14599
FunCoupENSG00000183795
BioGRIDBPY2B
STRING (EMBL)BPY2B
ZODIACBPY2B
Ontologies - Pathways
QuickGOO14599
Ontology : AmiGOprotein binding  nucleus  spermatogenesis  single fertilization  HECT domain binding  
Ontology : EGO-EBIprotein binding  nucleus  spermatogenesis  single fertilization  HECT domain binding  
NDEx NetworkBPY2B
Atlas of Cancer Signalling NetworkBPY2B
Wikipedia pathwaysBPY2B
Orthology - Evolution
OrthoDB442867
GeneTree (enSembl)ENSG00000183795
Phylogenetic Trees/Animal Genes : TreeFamBPY2B
HOVERGENO14599
HOGENOMO14599
Homologs : HomoloGeneBPY2B
Homology/Alignments : Family Browser (UCSC)BPY2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPY2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPY2B
dbVarBPY2B
ClinVarBPY2B
1000_GenomesBPY2B 
Exome Variant ServerBPY2B
ExAC (Exome Aggregation Consortium)BPY2B (select the gene name)
Genetic variants : HAPMAP442867
Genomic Variants (DGV)BPY2B [DGVbeta]
DECIPHERBPY2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBPY2B 
Mutations
ICGC Data PortalBPY2B 
TCGA Data PortalBPY2B 
Broad Tumor PortalBPY2B
OASIS PortalBPY2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBPY2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBPY2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BPY2B
DgiDB (Drug Gene Interaction Database)BPY2B
DoCM (Curated mutations)BPY2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPY2B (select a term)
intoGenBPY2B
Cancer3DBPY2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBPY2B
Genetic Testing Registry BPY2B
NextProtO14599 [Medical]
TSGene442867
GENETestsBPY2B
Target ValidationBPY2B
Huge Navigator BPY2B [HugePedia]
snp3D : Map Gene to Disease442867
BioCentury BCIQBPY2B
ClinGenBPY2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442867
Chemical/Pharm GKB GenePA134906625
Clinical trialBPY2B
Miscellaneous
canSAR (ICR)BPY2B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPY2B
EVEXBPY2B
GoPubMedBPY2B
iHOPBPY2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:27 CEST 2017

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