Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BPY2C (basic charge, Y-linked, 2C)

Identity

Alias_symbol (synonym)VCY2C
Other alias
HGNC (Hugo) BPY2C
LocusID (NCBI) 442868
Atlas_Id 60801
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 22984263 and ends at 23005463 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPY2C   18225
Cards
Entrez_Gene (NCBI)BPY2C  442868  basic charge, Y-linked, 2C
AliasesVCY2C
GeneCards (Weizmann)BPY2C
Ensembl hg19 (Hinxton)ENSG00000185894 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185894 [Gene_View]  chrY:22984263-23005463 [Contig_View]  BPY2C [Vega]
ICGC DataPortalENSG00000185894
TCGA cBioPortalBPY2C
AceView (NCBI)BPY2C
Genatlas (Paris)BPY2C
WikiGenes442868
SOURCE (Princeton)BPY2C
Genetics Home Reference (NIH)BPY2C
Genomic and cartography
GoldenPath hg38 (UCSC)BPY2C  -     chrY:22984263-23005463 +  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BPY2C  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblBPY2C - Yq11.223 [CytoView hg19]  BPY2C - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIBPY2C [Mapview hg19]  BPY2C [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC148464 BC156664
RefSeq transcript (Entrez)NM_001002761
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BPY2C
Cluster EST : UnigeneHs.664724 [ NCBI ]
CGAP (NCI)Hs.664724
Alternative Splicing GalleryENSG00000185894
Gene ExpressionBPY2C [ NCBI-GEO ]   BPY2C [ EBI - ARRAY_EXPRESS ]   BPY2C [ SEEK ]   BPY2C [ MEM ]
Gene Expression Viewer (FireBrowse)BPY2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442868
GTEX Portal (Tissue expression)BPY2C
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14599   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14599  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14599
Splice isoforms : SwissVarO14599
PhosPhoSitePlusO14599
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BPY2C
DMDM Disease mutations442868
Blocks (Seattle)BPY2C
SuperfamilyO14599
Human Protein AtlasENSG00000185894
Peptide AtlasO14599
HPRD18658
Protein Interaction databases
DIP (DOE-UCLA)O14599
IntAct (EBI)O14599
FunCoupENSG00000185894
BioGRIDBPY2C
STRING (EMBL)BPY2C
ZODIACBPY2C
Ontologies - Pathways
QuickGOO14599
Ontology : AmiGOprotein binding  nucleus  spermatogenesis  single fertilization  HECT domain binding  
Ontology : EGO-EBIprotein binding  nucleus  spermatogenesis  single fertilization  HECT domain binding  
NDEx NetworkBPY2C
Atlas of Cancer Signalling NetworkBPY2C
Wikipedia pathwaysBPY2C
Orthology - Evolution
OrthoDB442868
GeneTree (enSembl)ENSG00000185894
Phylogenetic Trees/Animal Genes : TreeFamBPY2C
HOVERGENO14599
HOGENOMO14599
Homologs : HomoloGeneBPY2C
Homology/Alignments : Family Browser (UCSC)BPY2C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPY2C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPY2C
dbVarBPY2C
ClinVarBPY2C
1000_GenomesBPY2C 
Exome Variant ServerBPY2C
ExAC (Exome Aggregation Consortium)BPY2C (select the gene name)
Genetic variants : HAPMAP442868
Genomic Variants (DGV)BPY2C [DGVbeta]
DECIPHERBPY2C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBPY2C 
Mutations
ICGC Data PortalBPY2C 
TCGA Data PortalBPY2C 
Broad Tumor PortalBPY2C
OASIS PortalBPY2C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBPY2C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBPY2C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BPY2C
DgiDB (Drug Gene Interaction Database)BPY2C
DoCM (Curated mutations)BPY2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPY2C (select a term)
intoGenBPY2C
Cancer3DBPY2C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBPY2C
Genetic Testing Registry BPY2C
NextProtO14599 [Medical]
TSGene442868
GENETestsBPY2C
Target ValidationBPY2C
Huge Navigator BPY2C [HugePedia]
snp3D : Map Gene to Disease442868
BioCentury BCIQBPY2C
ClinGenBPY2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442868
Chemical/Pharm GKB GenePA134873304
Clinical trialBPY2C
Miscellaneous
canSAR (ICR)BPY2C (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPY2C
EVEXBPY2C
GoPubMedBPY2C
iHOPBPY2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:39:52 CEST 2017

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