Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BRCAT54 (breast cancer-associated transcript 54)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100506674
Atlas_Id 55295
Location 5p12  [Link to chromosome band 5p12]
Location_base_pair Starts at 44744328 and ends at 44808793 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)BRCAT54  100506674  breast cancer-associated transcript 54
Aliases
GeneCards (Weizmann)BRCAT54
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:44744328-44808793 [Contig_View]  BRCAT54 [Vega]
TCGA cBioPortalBRCAT54
AceView (NCBI)BRCAT54
Genatlas (Paris)BRCAT54
WikiGenes100506674
SOURCE (Princeton)BRCAT54
Genetics Home Reference (NIH)BRCAT54
Genomic and cartography
GoldenPath hg38 (UCSC)BRCAT54  -     chr5:44744328-44808793 -  5p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRCAT54  -     5p12   [Description]    (hg19-Feb_2009)
EnsemblBRCAT54 - 5p12 [CytoView hg19]  BRCAT54 - 5p12 [CytoView hg38]
Mapping of homologs : NCBIBRCAT54 [Mapview hg19]  BRCAT54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL691871 BG612611 BM679915 BY797234 HY123663
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BRCAT54
Cluster EST : UnigeneHs.575213 [ NCBI ]
CGAP (NCI)Hs.575213
Gene ExpressionBRCAT54 [ NCBI-GEO ]   BRCAT54 [ EBI - ARRAY_EXPRESS ]   BRCAT54 [ SEEK ]   BRCAT54 [ MEM ]
Gene Expression Viewer (FireBrowse)BRCAT54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506674
GTEX Portal (Tissue expression)BRCAT54
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BRCAT54
DMDM Disease mutations100506674
Blocks (Seattle)BRCAT54
Protein Interaction databases
BioGRIDBRCAT54
STRING (EMBL)BRCAT54
ZODIACBRCAT54
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100506674
BioCentury BCIQBRCAT54
ClinGenBRCAT54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506674
Clinical trialBRCAT54
Miscellaneous
canSAR (ICR)BRCAT54 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRCAT54
EVEXBRCAT54
GoPubMedBRCAT54
iHOPBRCAT54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:56:14 CEST 2017

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