Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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BRD1 (bromodomain containing 1)


Other namesBRL
HGNC (Hugo) BRD1
LocusID (NCBI) 23774
Location 22q13.33
Location_base_pair Starts at 50166926 and ends at 50221196 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute





Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias 11q23ChildAMLID1615

External links

HGNC (Hugo)BRD1   1102
Entrez_Gene (NCBI)BRD1  23774  bromodomain containing 1
GeneCards (Weizmann)BRD1
Ensembl hg19 (Hinxton)ENSG00000100425 [Gene_View]  chr22:50166926-50221196 [Contig_View]  BRD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100425 [Gene_View]  chr22:50166926-50221196 [Contig_View]  BRD1 [Vega]
ICGC DataPortalENSG00000100425
AceView (NCBI)BRD1
Genatlas (Paris)BRD1
SOURCE (Princeton)BRD1
Genomic and cartography
GoldenPath hg19 (UCSC)BRD1  -     chr22:50166926-50221196 -  22q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BRD1  -     22q13.33   [Description]    (hg38-Dec_2013)
EnsemblBRD1 - 22q13.33 [CytoView hg19]  BRD1 - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBIBRD1 [Mapview hg19]  BRD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA969405 AB209216 AF005067 AK292428 AK302736
RefSeq transcript (Entrez)NM_001304808 NM_001304809 NM_014577
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)BRD1
Cluster EST : UnigeneHs.127950 [ NCBI ]
CGAP (NCI)Hs.127950
Alternative Splicing : Fast-db (Paris)GSHG0020504
Alternative Splicing GalleryENSG00000100425
Gene ExpressionBRD1 [ NCBI-GEO ]     BRD1 [ SEEK ]   BRD1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95696 (Uniprot)
NextProtO95696  [Medical]
With graphics : InterProO95696
Splice isoforms : SwissVarO95696 (Swissvar)
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)    PWWP (PS50812)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Bromodomain    Bromodomain_CS    Enhancer_polycomb-like_N    PWWP_dom    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Related proteins : CluSTrO95696
Domain families : Pfam (Sanger)Bromodomain (PF00439)    EPL1 (PF10513)    PWWP (PF00855)   
Domain families : Pfam (NCBI)pfam00439    pfam10513    pfam00855   
Domain families : Smart (EMBL)BROMO (SM00297)  PHD (SM00249)  PWWP (SM00293)  
DMDM Disease mutations23774
Blocks (Seattle)O95696
PDB (SRS)2KU3    2L43    2LQ6    3LYI    3RCW   
PDB (PDBSum)2KU3    2L43    2LQ6    3LYI    3RCW   
PDB (IMB)2KU3    2L43    2LQ6    3LYI    3RCW   
PDB (RSDB)2KU3    2L43    2LQ6    3LYI    3RCW   
Human Protein AtlasENSG00000100425
Peptide AtlasO95696
IPIIPI00032214   IPI00384471   IPI00922474   IPI00941079   IPI01011372   IPI00556201   
Protein Interaction databases
IntAct (EBI)O95696
Ontologies - Pathways
Ontology : AmiGOnucleus  nucleus  nucleoplasm  zinc ion binding  histone binding  histone H3 acetylation  MOZ/MORF histone acetyltransferase complex  
Ontology : EGO-EBInucleus  nucleus  nucleoplasm  zinc ion binding  histone binding  histone H3 acetylation  MOZ/MORF histone acetyltransferase complex  
Protein Interaction DatabaseBRD1
DoCM (Curated mutations)BRD1
Wikipedia pathwaysBRD1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerBRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRD1
Exome Variant ServerBRD1
SNP (GeneSNP Utah)BRD1
Genetic variants : HAPMAPBRD1
Genomic Variants (DGV)BRD1 [DGVbeta]
ICGC Data PortalENSG00000100425 
Somatic Mutations in Cancer : COSMICBRD1 
CONAN: Copy Number AnalysisBRD1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)22:50166926-50221196
Mutations and Diseases : HGMDBRD1
NextProtO95696 [Medical]
Disease Genetic AssociationBRD1
Huge Navigator BRD1 [HugePedia]  BRD1 [HugeCancerGEM]
snp3D : Map Gene to Disease23774
DGIdb (Drug Gene Interaction db)BRD1
General knowledge
Homologs : HomoloGeneBRD1
Homology/Alignments : Family Browser (UCSC)BRD1
Phylogenetic Trees/Animal Genes : TreeFamBRD1
Chemical/Protein Interactions : CTD23774
Chemical/Pharm GKB GenePA25413
Clinical trialBRD1
Cancer Resource (Charite)ENSG00000100425
Other databases
PubMed35 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 14:50:18 CET 2015

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