Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BRD2 (bromodomain containing 2)

Identity

Alias (NCBI)BRD2-IT1
D6S113E
FSH
FSRG1
NAT
O27.1.1
RING3
RNF3
HGNC (Hugo) BRD2
HGNC Alias symbKIAA9001
RING3
D6S113E
NAT
FSRG1
HGNC Previous nameBRD2-IT1
HGNC Previous namebromodomain-containing 2
 BRD2 intronic transcript 1
LocusID (NCBI) 6046
Atlas_Id 836
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32968594 and ends at 32981500 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BRD2 (6p21.32) / BRD2 (6p21.32)BRD2 (6p21.32) / CALR (19p13.2)BRD2 (6p21.32) / SLC39A11 (17q24.3)
BRD2 (6p21.32) / TMBIM6 (12q13.12)BRD2 (6p21.32) / YY1AP1 (1q22)CALR (19p13.2) / BRD2 (6p21.32)
EFNA1 (1q22) / BRD2 (6p21.32)NADK2 (5p13.2) / BRD2 (6p21.32)PPP3CA (4q24) / BRD2 (6p21.32)
ZNF445 (3p21.31) / BRD2 (6p21.32)CALR 19p13.2 / BRD2 6p21.32PPP3CA 4q24 / BRD2 6p21.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)BRD2   1103
Cards
Entrez_Gene (NCBI)BRD2    bromodomain containing 2
AliasesBRD2-IT1; D6S113E; FSH; FSRG1; 
NAT; O27.1.1; RING3; RNF3
GeneCards (Weizmann)BRD2
Ensembl hg19 (Hinxton)ENSG00000204256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204256 [Gene_View]  ENSG00000204256 [Sequence]  chr6:32968594-32981500 [Contig_View]  BRD2 [Vega]
ICGC DataPortalENSG00000204256
TCGA cBioPortalBRD2
AceView (NCBI)BRD2
Genatlas (Paris)BRD2
SOURCE (Princeton)BRD2
Genetics Home Reference (NIH)BRD2
Genomic and cartography
GoldenPath hg38 (UCSC)BRD2  -     chr6:32968594-32981500 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRD2  -     6p21.32   [Description]    (hg19-Feb_2009)
GoldenPathBRD2 - 6p21.32 [CytoView hg19]  BRD2 - 6p21.32 [CytoView hg38]
ImmunoBaseENSG00000204256
Genome Data Viewer NCBIBRD2 [Mapview hg19]  
OMIM601540   
Gene and transcription
Genbank (Entrez)AI983495 AK056504 AK309797 AL832722 AY152720
RefSeq transcript (Entrez)NM_001113182 NM_001199455 NM_001199456 NM_001291986 NM_005104
Consensus coding sequences : CCDS (NCBI)BRD2
Gene ExpressionBRD2 [ NCBI-GEO ]   BRD2 [ EBI - ARRAY_EXPRESS ]   BRD2 [ SEEK ]   BRD2 [ MEM ]
Gene Expression Viewer (FireBrowse)BRD2 [ Firebrowse - Broad ]
GenevisibleExpression of BRD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6046
GTEX Portal (Tissue expression)BRD2
Human Protein AtlasENSG00000204256-BRD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BRD2
Human Protein Atlas [tissue]ENSG00000204256-BRD2 [tissue]
HPRD03326
Protein Interaction databases
BioGRIDBRD2
STRING (EMBL)BRD2
ZODIACBRD2
Ontologies - Pathways
Litterature
PubMed115 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBRD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:01:25 CEST 2021

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