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BRD7 (bromodomain containing 7)

Identity

Alias_namesbromodomain-containing 7
Alias_symbol (synonym)CELTIX1
BP75
Other aliasNAG4
HGNC (Hugo) BRD7
LocusID (NCBI) 29117
Atlas_Id 45835
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 50352929 and ends at 50402845 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABCC1 (16p13.11) / BRD7 (16q12.1)BRD7 (16q12.1) / BRD7 (16q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRD7   14310
Cards
Entrez_Gene (NCBI)BRD7  29117  bromodomain containing 7
AliasesBP75; CELTIX1; NAG4
GeneCards (Weizmann)BRD7
Ensembl hg19 (Hinxton)ENSG00000166164 [Gene_View]  chr16:50352929-50402845 [Contig_View]  BRD7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166164 [Gene_View]  chr16:50352929-50402845 [Contig_View]  BRD7 [Vega]
ICGC DataPortalENSG00000166164
TCGA cBioPortalBRD7
AceView (NCBI)BRD7
Genatlas (Paris)BRD7
WikiGenes29117
SOURCE (Princeton)BRD7
Genetics Home Reference (NIH)BRD7
Genomic and cartography
GoldenPath hg19 (UCSC)BRD7  -     chr16:50352929-50402845 -  16q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BRD7  -     16q12.1   [Description]    (hg38-Dec_2013)
EnsemblBRD7 - 16q12.1 [CytoView hg19]  BRD7 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBIBRD7 [Mapview hg19]  BRD7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF152604 AF213969 AJ271881 AK027308 AK074613
RefSeq transcript (Entrez)NM_001173984 NM_013263
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_023418 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)BRD7
Cluster EST : UnigeneHs.437894 [ NCBI ]
CGAP (NCI)Hs.437894
Alternative Splicing GalleryENSG00000166164
Gene ExpressionBRD7 [ NCBI-GEO ]   BRD7 [ EBI - ARRAY_EXPRESS ]   BRD7 [ SEEK ]   BRD7 [ MEM ]
Gene Expression Viewer (FireBrowse)BRD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29117
GTEX Portal (Tissue expression)BRD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPI1
Splice isoforms : SwissVarQ9NPI1
PhosPhoSitePlusQ9NPI1
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_2 (PS50014)   
Domains : Interpro (EBI)Bromodomain    DUF3512   
Domain families : Pfam (Sanger)Bromodomain (PF00439)    DUF3512 (PF12024)   
Domain families : Pfam (NCBI)pfam00439    pfam12024   
Domain families : Smart (EMBL)BROMO (SM00297)  
Conserved Domain (NCBI)BRD7
DMDM Disease mutations29117
Blocks (Seattle)BRD7
PDB (SRS)2I7K   
PDB (PDBSum)2I7K   
PDB (IMB)2I7K   
PDB (RSDB)2I7K   
Structural Biology KnowledgeBase2I7K   
SCOP (Structural Classification of Proteins)2I7K   
CATH (Classification of proteins structures)2I7K   
SuperfamilyQ9NPI1
Human Protein AtlasENSG00000166164
Peptide AtlasQ9NPI1
IPIIPI00001707   IPI00647008   IPI00877745   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPI1
IntAct (EBI)Q9NPI1
FunCoupENSG00000166164
BioGRIDBRD7
STRING (EMBL)BRD7
ZODIACBRD7
Ontologies - Pathways
QuickGOQ9NPI1
Ontology : AmiGOp53 binding  transcription coactivator activity  transcription corepressor activity  transcription corepressor activity  protein binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  cell cycle  transcription factor binding  negative regulation of cell proliferation  Wnt signaling pathway  positive regulation of histone acetylation  histone binding  transcription regulatory region DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  lysine-acetylated histone binding  BAF-type complex  regulation of signal transduction by p53 class mediator  negative regulation of G1/S transition of mitotic cell cycle  
Ontology : EGO-EBIp53 binding  transcription coactivator activity  transcription corepressor activity  transcription corepressor activity  protein binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  cell cycle  transcription factor binding  negative regulation of cell proliferation  Wnt signaling pathway  positive regulation of histone acetylation  histone binding  transcription regulatory region DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  lysine-acetylated histone binding  BAF-type complex  regulation of signal transduction by p53 class mediator  negative regulation of G1/S transition of mitotic cell cycle  
NDEx NetworkBRD7
Atlas of Cancer Signalling NetworkBRD7
Wikipedia pathwaysBRD7
Orthology - Evolution
OrthoDB29117
GeneTree (enSembl)ENSG00000166164
Phylogenetic Trees/Animal Genes : TreeFamBRD7
HOVERGENQ9NPI1
HOGENOMQ9NPI1
Homologs : HomoloGeneBRD7
Homology/Alignments : Family Browser (UCSC)BRD7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRD7
dbVarBRD7
ClinVarBRD7
1000_GenomesBRD7 
Exome Variant ServerBRD7
ExAC (Exome Aggregation Consortium)BRD7 (select the gene name)
Genetic variants : HAPMAP29117
Genomic Variants (DGV)BRD7 [DGVbeta]
DECIPHER (Syndromes)16:50352929-50402845  ENSG00000166164
CONAN: Copy Number AnalysisBRD7 
Mutations
ICGC Data PortalBRD7 
TCGA Data PortalBRD7 
Broad Tumor PortalBRD7
OASIS PortalBRD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBRD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBRD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BRD7
DgiDB (Drug Gene Interaction Database)BRD7
DoCM (Curated mutations)BRD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRD7 (select a term)
intoGenBRD7
Cancer3DBRD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBRD7
Genetic Testing Registry BRD7
NextProtQ9NPI1 [Medical]
TSGene29117
GENETestsBRD7
Huge Navigator BRD7 [HugePedia]
snp3D : Map Gene to Disease29117
BioCentury BCIQBRD7
ClinGenBRD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29117
Chemical/Pharm GKB GenePA25417
Clinical trialBRD7
Miscellaneous
canSAR (ICR)BRD7 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRD7
EVEXBRD7
GoPubMedBRD7
iHOPBRD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:57:49 CET 2017

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