Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BRD9 (bromodomain containing 9)

Identity

Alias_symbol (synonym)FLJ13441
Other aliasLAVS3040
PRO9856
HGNC (Hugo) BRD9
LocusID (NCBI) 65980
Atlas_Id 60804
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 863735 and ends at 892559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BRD9 (5p15.33) / ACADVL (17p13.1)BRD9 (5p15.33) / CEP72 (5p15.33)BRD9 (5p15.33) / DGKD (2q37.1)
BRD9 (5p15.33) / LOC100507412 (-)BRD9 (5p15.33) / NUTM1 (15q14)GALNT2 (1q42.13) / BRD9 (5p15.33)
TTF2 (1p13.1) / BRD9 (5p15.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRD9   25818
Cards
Entrez_Gene (NCBI)BRD9  65980  bromodomain containing 9
AliasesLAVS3040; PRO9856
GeneCards (Weizmann)BRD9
Ensembl hg19 (Hinxton)ENSG00000028310 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000028310 [Gene_View]  chr5:863735-892559 [Contig_View]  BRD9 [Vega]
ICGC DataPortalENSG00000028310
TCGA cBioPortalBRD9
AceView (NCBI)BRD9
Genatlas (Paris)BRD9
WikiGenes65980
SOURCE (Princeton)BRD9
Genetics Home Reference (NIH)BRD9
Genomic and cartography
GoldenPath hg38 (UCSC)BRD9  -     chr5:863735-892559 -  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRD9  -     5p15.33   [Description]    (hg19-Feb_2009)
EnsemblBRD9 - 5p15.33 [CytoView hg19]  BRD9 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBIBRD9 [Mapview hg19]  BRD9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023503 AK024392 AK026830 AK125518 AK297573
RefSeq transcript (Entrez)NM_001009877 NM_001317951 NM_023924
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BRD9
Cluster EST : UnigeneHs.449278 [ NCBI ]
CGAP (NCI)Hs.449278
Alternative Splicing GalleryENSG00000028310
Gene ExpressionBRD9 [ NCBI-GEO ]   BRD9 [ EBI - ARRAY_EXPRESS ]   BRD9 [ SEEK ]   BRD9 [ MEM ]
Gene Expression Viewer (FireBrowse)BRD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65980
GTEX Portal (Tissue expression)BRD9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8M2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8M2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8M2
Splice isoforms : SwissVarQ9H8M2
PhosPhoSitePlusQ9H8M2
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_2 (PS50014)   
Domains : Interpro (EBI)Bromodomain    DUF3512   
Domain families : Pfam (Sanger)Bromodomain (PF00439)    DUF3512 (PF12024)   
Domain families : Pfam (NCBI)pfam00439    pfam12024   
Domain families : Smart (EMBL)BROMO (SM00297)  
Conserved Domain (NCBI)BRD9
DMDM Disease mutations65980
Blocks (Seattle)BRD9
PDB (SRS)3HME    4NQN    4UIT    4UIU    4UIV    4UIW    4XY8    4YY4    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4Z6H    4Z6I    5E9V    5EU1    5F1H    5F1L    5F25    5F2P    5I40    5I7X    5I7Y    5IGM    5IGN    5JI8   
PDB (PDBSum)3HME    4NQN    4UIT    4UIU    4UIV    4UIW    4XY8    4YY4    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4Z6H    4Z6I    5E9V    5EU1    5F1H    5F1L    5F25    5F2P    5I40    5I7X    5I7Y    5IGM    5IGN    5JI8   
PDB (IMB)3HME    4NQN    4UIT    4UIU    4UIV    4UIW    4XY8    4YY4    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4Z6H    4Z6I    5E9V    5EU1    5F1H    5F1L    5F25    5F2P    5I40    5I7X    5I7Y    5IGM    5IGN    5JI8   
PDB (RSDB)3HME    4NQN    4UIT    4UIU    4UIV    4UIW    4XY8    4YY4    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4Z6H    4Z6I    5E9V    5EU1    5F1H    5F1L    5F25    5F2P    5I40    5I7X    5I7Y    5IGM    5IGN    5JI8   
Structural Biology KnowledgeBase3HME    4NQN    4UIT    4UIU    4UIV    4UIW    4XY8    4YY4    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4Z6H    4Z6I    5E9V    5EU1    5F1H    5F1L    5F25    5F2P    5I40    5I7X    5I7Y    5IGM    5IGN    5JI8   
SCOP (Structural Classification of Proteins)3HME    4NQN    4UIT    4UIU    4UIV    4UIW    4XY8    4YY4    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4Z6H    4Z6I    5E9V    5EU1    5F1H    5F1L    5F25    5F2P    5I40    5I7X    5I7Y    5IGM    5IGN    5JI8   
CATH (Classification of proteins structures)3HME    4NQN    4UIT    4UIU    4UIV    4UIW    4XY8    4YY4    4YY6    4YYD    4YYG    4YYH    4YYI    4YYJ    4YYK    4Z6H    4Z6I    5E9V    5EU1    5F1H    5F1L    5F25    5F2P    5I40    5I7X    5I7Y    5IGM    5IGN    5JI8   
SuperfamilyQ9H8M2
Human Protein AtlasENSG00000028310
Peptide AtlasQ9H8M2
HPRD12532
IPIIPI00549384   IPI00759680   IPI00759488   IPI00930290   IPI01015405   IPI00384443   IPI00479047   IPI00947457   IPI00908515   IPI00978756   IPI00977507   IPI00976847   IPI00978040   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8M2
IntAct (EBI)Q9H8M2
FunCoupENSG00000028310
BioGRIDBRD9
STRING (EMBL)BRD9
ZODIACBRD9
Ontologies - Pathways
QuickGOQ9H8M2
Ontology : AmiGOnucleic acid binding  protein binding  cellular_component  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  covalent chromatin modification  lysine-acetylated histone binding  
Ontology : EGO-EBInucleic acid binding  protein binding  cellular_component  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  covalent chromatin modification  lysine-acetylated histone binding  
NDEx NetworkBRD9
Atlas of Cancer Signalling NetworkBRD9
Wikipedia pathwaysBRD9
Orthology - Evolution
OrthoDB65980
GeneTree (enSembl)ENSG00000028310
Phylogenetic Trees/Animal Genes : TreeFamBRD9
HOVERGENQ9H8M2
HOGENOMQ9H8M2
Homologs : HomoloGeneBRD9
Homology/Alignments : Family Browser (UCSC)BRD9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRD9
dbVarBRD9
ClinVarBRD9
1000_GenomesBRD9 
Exome Variant ServerBRD9
ExAC (Exome Aggregation Consortium)BRD9 (select the gene name)
Genetic variants : HAPMAP65980
Genomic Variants (DGV)BRD9 [DGVbeta]
DECIPHERBRD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBRD9 
Mutations
ICGC Data PortalBRD9 
TCGA Data PortalBRD9 
Broad Tumor PortalBRD9
OASIS PortalBRD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBRD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBRD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BRD9
DgiDB (Drug Gene Interaction Database)BRD9
DoCM (Curated mutations)BRD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRD9 (select a term)
intoGenBRD9
Cancer3DBRD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBRD9
Genetic Testing Registry BRD9
NextProtQ9H8M2 [Medical]
TSGene65980
GENETestsBRD9
Target ValidationBRD9
Huge Navigator BRD9 [HugePedia]
snp3D : Map Gene to Disease65980
BioCentury BCIQBRD9
ClinGenBRD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65980
Chemical/Pharm GKB GenePA134866578
Clinical trialBRD9
Miscellaneous
canSAR (ICR)BRD9 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRD9
EVEXBRD9
GoPubMedBRD9
iHOPBRD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:27 CEST 2017

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