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BRDTP1 (bromodomain testis associated pseudogene 1)

Identity

Alias_namesbromodomain, testis-specific pseudogene 1
Other alias-
HGNC (Hugo) BRDTP1
LocusID (NCBI) 643486
Atlas_Id 77050
Location Xq21.33  [Link to chromosome band Xq21]
Location_base_pair Starts at 96337086 and ends at 96337902 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRDTP1   51447
Cards
Entrez_Gene (NCBI)BRDTP1  643486  bromodomain testis associated pseudogene 1
Aliases
GeneCards (Weizmann)BRDTP1
Ensembl hg19 (Hinxton)ENSG00000271209 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271209 [Gene_View]  chrX:96337086-96337902 [Contig_View]  BRDTP1 [Vega]
ICGC DataPortalENSG00000271209
TCGA cBioPortalBRDTP1
AceView (NCBI)BRDTP1
Genatlas (Paris)BRDTP1
WikiGenes643486
SOURCE (Princeton)BRDTP1
Genetics Home Reference (NIH)BRDTP1
Genomic and cartography
GoldenPath hg38 (UCSC)BRDTP1  -     chrX:96337086-96337902 -  Xq21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRDTP1  -     Xq21.33   [Description]    (hg19-Feb_2009)
EnsemblBRDTP1 - Xq21.33 [CytoView hg19]  BRDTP1 - Xq21.33 [CytoView hg38]
Mapping of homologs : NCBIBRDTP1 [Mapview hg19]  BRDTP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124282
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BRDTP1
Cluster EST : UnigeneHs.590806 [ NCBI ]
CGAP (NCI)Hs.590806
Alternative Splicing GalleryENSG00000271209
Gene ExpressionBRDTP1 [ NCBI-GEO ]   BRDTP1 [ EBI - ARRAY_EXPRESS ]   BRDTP1 [ SEEK ]   BRDTP1 [ MEM ]
Gene Expression Viewer (FireBrowse)BRDTP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)643486
GTEX Portal (Tissue expression)BRDTP1
Human Protein AtlasENSG00000271209-BRDTP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BRDTP1
DMDM Disease mutations643486
Blocks (Seattle)BRDTP1
Human Protein Atlas [tissue]ENSG00000271209-BRDTP1 [tissue]
Protein Interaction databases
FunCoupENSG00000271209
BioGRIDBRDTP1
STRING (EMBL)BRDTP1
ZODIACBRDTP1
Ontologies - Pathways
Huge Navigator BRDTP1 [HugePedia]
snp3D : Map Gene to Disease643486
BioCentury BCIQBRDTP1
ClinGenBRDTP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643486
Clinical trialBRDTP1
Miscellaneous
canSAR (ICR)BRDTP1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRDTP1
EVEXBRDTP1
GoPubMedBRDTP1
iHOPBRDTP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:20:16 CET 2017

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