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BRI3BP (BRI3 binding protein)

Identity

Alias_symbol (synonym)BNAS1
KG19
HCCR-2
HCCRBP-3
Other aliasHCCR-1
HCCRBP-1
HGNC (Hugo) BRI3BP
LocusID (NCBI) 140707
Atlas_Id 60806
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 125478194 and ends at 125510349 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RNF7 (3q23) / BRI3BP (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRI3BP   14251
Cards
Entrez_Gene (NCBI)BRI3BP  140707  BRI3 binding protein
AliasesBNAS1; HCCR-1; HCCR-2; HCCRBP-1; 
KG19
GeneCards (Weizmann)BRI3BP
Ensembl hg19 (Hinxton) [Gene_View]  chr12:125478194-125510349 [Contig_View]  BRI3BP [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:125478194-125510349 [Contig_View]  BRI3BP [Vega]
TCGA cBioPortalBRI3BP
AceView (NCBI)BRI3BP
Genatlas (Paris)BRI3BP
WikiGenes140707
SOURCE (Princeton)BRI3BP
Genetics Home Reference (NIH)BRI3BP
Genomic and cartography
GoldenPath hg19 (UCSC)BRI3BP  -     chr12:125478194-125510349 +  12q24.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BRI3BP  -     12q24.31   [Description]    (hg38-Dec_2013)
EnsemblBRI3BP - 12q24.31 [CytoView hg19]  BRI3BP - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIBRI3BP [Mapview hg19]  BRI3BP [Mapview hg38]
OMIM615627   
Gene and transcription
Genbank (Entrez)AF283671 AF284094 AF441865 AK055703 BC034525
RefSeq transcript (Entrez)NM_080626
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929386
Consensus coding sequences : CCDS (NCBI)BRI3BP
Cluster EST : UnigeneHs.596464 [ NCBI ]
CGAP (NCI)Hs.596464
Gene ExpressionBRI3BP [ NCBI-GEO ]   BRI3BP [ EBI - ARRAY_EXPRESS ]   BRI3BP [ SEEK ]   BRI3BP [ MEM ]
Gene Expression Viewer (FireBrowse)BRI3BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140707
GTEX Portal (Tissue expression)BRI3BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WY22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WY22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WY22
Splice isoforms : SwissVarQ8WY22
PhosPhoSitePlusQ8WY22
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BRI3BP
DMDM Disease mutations140707
Blocks (Seattle)BRI3BP
SuperfamilyQ8WY22
Peptide AtlasQ8WY22
HPRD09829
IPIIPI00103599   IPI00383489   
Protein Interaction databases
DIP (DOE-UCLA)Q8WY22
IntAct (EBI)Q8WY22
BioGRIDBRI3BP
STRING (EMBL)BRI3BP
ZODIACBRI3BP
Ontologies - Pathways
QuickGOQ8WY22
Ontology : AmiGOmitochondrion  mitochondrial outer membrane  integral component of membrane  
Ontology : EGO-EBImitochondrion  mitochondrial outer membrane  integral component of membrane  
NDEx NetworkBRI3BP
Atlas of Cancer Signalling NetworkBRI3BP
Wikipedia pathwaysBRI3BP
Orthology - Evolution
OrthoDB140707
Phylogenetic Trees/Animal Genes : TreeFamBRI3BP
HOVERGENQ8WY22
HOGENOMQ8WY22
Homologs : HomoloGeneBRI3BP
Homology/Alignments : Family Browser (UCSC)BRI3BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRI3BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRI3BP
dbVarBRI3BP
ClinVarBRI3BP
1000_GenomesBRI3BP 
Exome Variant ServerBRI3BP
ExAC (Exome Aggregation Consortium)BRI3BP (select the gene name)
Genetic variants : HAPMAP140707
Genomic Variants (DGV)BRI3BP [DGVbeta]
DECIPHER (Syndromes)12:125478194-125510349  
CONAN: Copy Number AnalysisBRI3BP 
Mutations
ICGC Data PortalBRI3BP 
TCGA Data PortalBRI3BP 
Broad Tumor PortalBRI3BP
OASIS PortalBRI3BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBRI3BP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBRI3BP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BRI3BP
DgiDB (Drug Gene Interaction Database)BRI3BP
DoCM (Curated mutations)BRI3BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRI3BP (select a term)
intoGenBRI3BP
Cancer3DBRI3BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615627   
Orphanet
MedgenBRI3BP
Genetic Testing Registry BRI3BP
NextProtQ8WY22 [Medical]
TSGene140707
GENETestsBRI3BP
Huge Navigator BRI3BP [HugePedia]
snp3D : Map Gene to Disease140707
BioCentury BCIQBRI3BP
ClinGenBRI3BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140707
Chemical/Pharm GKB GenePA25423
Clinical trialBRI3BP
Miscellaneous
canSAR (ICR)BRI3BP (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRI3BP
EVEXBRI3BP
GoPubMedBRI3BP
iHOPBRI3BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:02 CET 2017

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