Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BRICD5 (BRICHOS domain containing 5)

Identity

Alias_namesC16orf79
chromosome 16 open reading frame 79
Alias_symbol (synonym)MGC21830
Other alias
HGNC (Hugo) BRICD5
LocusID (NCBI) 283870
Atlas_Id 55977
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2259254 and ends at 2261069 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRICD5   28309
Cards
Entrez_Gene (NCBI)BRICD5  283870  BRICHOS domain containing 5
AliasesC16orf79
GeneCards (Weizmann)BRICD5
Ensembl hg19 (Hinxton)ENSG00000182685 [Gene_View]  chr16:2259254-2261069 [Contig_View]  BRICD5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182685 [Gene_View]  chr16:2259254-2261069 [Contig_View]  BRICD5 [Vega]
ICGC DataPortalENSG00000182685
TCGA cBioPortalBRICD5
AceView (NCBI)BRICD5
Genatlas (Paris)BRICD5
WikiGenes283870
SOURCE (Princeton)BRICD5
Genetics Home Reference (NIH)BRICD5
Genomic and cartography
GoldenPath hg19 (UCSC)BRICD5  -     chr16:2259254-2261069 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BRICD5  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblBRICD5 - 16p13.3 [CytoView hg19]  BRICD5 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIBRICD5 [Mapview hg19]  BRICD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_182563
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BRICD5
Cluster EST : UnigeneHs.647399 [ NCBI ]
CGAP (NCI)Hs.647399
Alternative Splicing GalleryENSG00000182685
Gene ExpressionBRICD5 [ NCBI-GEO ]   BRICD5 [ EBI - ARRAY_EXPRESS ]   BRICD5 [ SEEK ]   BRICD5 [ MEM ]
Gene Expression Viewer (FireBrowse)BRICD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283870
GTEX Portal (Tissue expression)BRICD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PL45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PL45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PL45
Splice isoforms : SwissVarQ6PL45
PhosPhoSitePlusQ6PL45
Domaine pattern : Prosite (Expaxy)BRICHOS (PS50869)   
Domains : Interpro (EBI)BRICHOS_dom   
Domain families : Pfam (Sanger)BRICHOS (PF04089)   
Domain families : Pfam (NCBI)pfam04089   
Domain families : Smart (EMBL)BRICHOS (SM01039)  
Conserved Domain (NCBI)BRICD5
DMDM Disease mutations283870
Blocks (Seattle)BRICD5
SuperfamilyQ6PL45
Human Protein AtlasENSG00000182685
Peptide AtlasQ6PL45
HPRD14482
IPIIPI00844026   IPI00217646   
Protein Interaction databases
DIP (DOE-UCLA)Q6PL45
IntAct (EBI)Q6PL45
FunCoupENSG00000182685
BioGRIDBRICD5
STRING (EMBL)BRICD5
ZODIACBRICD5
Ontologies - Pathways
QuickGOQ6PL45
Ontology : AmiGOextracellular space  integral component of membrane  regulation of cell proliferation  
Ontology : EGO-EBIextracellular space  integral component of membrane  regulation of cell proliferation  
NDEx NetworkBRICD5
Atlas of Cancer Signalling NetworkBRICD5
Wikipedia pathwaysBRICD5
Orthology - Evolution
OrthoDB283870
GeneTree (enSembl)ENSG00000182685
Phylogenetic Trees/Animal Genes : TreeFamBRICD5
HOVERGENQ6PL45
HOGENOMQ6PL45
Homologs : HomoloGeneBRICD5
Homology/Alignments : Family Browser (UCSC)BRICD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRICD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRICD5
dbVarBRICD5
ClinVarBRICD5
1000_GenomesBRICD5 
Exome Variant ServerBRICD5
ExAC (Exome Aggregation Consortium)BRICD5 (select the gene name)
Genetic variants : HAPMAP283870
Genomic Variants (DGV)BRICD5 [DGVbeta]
DECIPHER (Syndromes)16:2259254-2261069  ENSG00000182685
CONAN: Copy Number AnalysisBRICD5 
Mutations
ICGC Data PortalBRICD5 
TCGA Data PortalBRICD5 
Broad Tumor PortalBRICD5
OASIS PortalBRICD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBRICD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBRICD5
BioMutasearch BRICD5
DgiDB (Drug Gene Interaction Database)BRICD5
DoCM (Curated mutations)BRICD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRICD5 (select a term)
intoGenBRICD5
Cancer3DBRICD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBRICD5
Genetic Testing Registry BRICD5
NextProtQ6PL45 [Medical]
TSGene283870
GENETestsBRICD5
Huge Navigator BRICD5 [HugePedia]
snp3D : Map Gene to Disease283870
BioCentury BCIQBRICD5
ClinGenBRICD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283870
Chemical/Pharm GKB GenePA162378367
Clinical trialBRICD5
Miscellaneous
canSAR (ICR)BRICD5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRICD5
EVEXBRICD5
GoPubMedBRICD5
iHOPBRICD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:54:14 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.