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BRINP1 (BMP/retinoic acid inducible neural specific 1)

Identity

Alias_namesDBCCR1
DBC1
deleted in bladder cancer chromosome region candidate 1
deleted in bladder cancer 1
bone morphogenetic protein/retinoic acid inducible neural-specific 1
Alias_symbol (synonym)FAM5A
Other alias
HGNC (Hugo) BRINP1
LocusID (NCBI) 1620
Atlas_Id 53726
Location 9q33.1  [Link to chromosome band 9q33]
Location_base_pair Starts at 119166630 and ends at 119369461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C5 (9q33.2) / BRINP1 (9q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRINP1   2687
Cards
Entrez_Gene (NCBI)BRINP1  1620  BMP/retinoic acid inducible neural specific 1
AliasesDBC1; DBCCR1; FAM5A
GeneCards (Weizmann)BRINP1
Ensembl hg19 (Hinxton)ENSG00000078725 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000078725 [Gene_View]  chr9:119166630-119369461 [Contig_View]  BRINP1 [Vega]
ICGC DataPortalENSG00000078725
TCGA cBioPortalBRINP1
AceView (NCBI)BRINP1
Genatlas (Paris)BRINP1
WikiGenes1620
SOURCE (Princeton)BRINP1
Genetics Home Reference (NIH)BRINP1
Genomic and cartography
GoldenPath hg38 (UCSC)BRINP1  -     chr9:119166630-119369461 -  9q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRINP1  -     9q33.1   [Description]    (hg19-Feb_2009)
EnsemblBRINP1 - 9q33.1 [CytoView hg19]  BRINP1 - 9q33.1 [CytoView hg38]
Mapping of homologs : NCBIBRINP1 [Mapview hg19]  BRINP1 [Mapview hg38]
OMIM602865   
Gene and transcription
Genbank (Entrez)AF027734 AK293501 AK293649 BC021560 BC065196
RefSeq transcript (Entrez)NM_014618
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BRINP1
Cluster EST : UnigeneHs.532316 [ NCBI ]
CGAP (NCI)Hs.532316
Alternative Splicing GalleryENSG00000078725
Gene ExpressionBRINP1 [ NCBI-GEO ]   BRINP1 [ EBI - ARRAY_EXPRESS ]   BRINP1 [ SEEK ]   BRINP1 [ MEM ]
Gene Expression Viewer (FireBrowse)BRINP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1620
GTEX Portal (Tissue expression)BRINP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60477   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60477  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60477
Splice isoforms : SwissVarO60477
PhosPhoSitePlusO60477
Domains : Interpro (EBI)BRINP    MACPF   
Domain families : Pfam (Sanger)MACPF (PF01823)   
Domain families : Pfam (NCBI)pfam01823   
Domain families : Smart (EMBL)MACPF (SM00457)  
Conserved Domain (NCBI)BRINP1
DMDM Disease mutations1620
Blocks (Seattle)BRINP1
SuperfamilyO60477
Human Protein AtlasENSG00000078725
Peptide AtlasO60477
HPRD04181
IPIIPI00005607   IPI00644682   IPI00719605   
Protein Interaction databases
DIP (DOE-UCLA)O60477
IntAct (EBI)O60477
FunCoupENSG00000078725
BioGRIDBRINP1
STRING (EMBL)BRINP1
ZODIACBRINP1
Ontologies - Pathways
QuickGOO60477
Ontology : AmiGObehavioral fear response  protein binding  cytoplasm  endoplasmic reticulum  cell cycle arrest  short-term memory  cell death  dendrite  social behavior  exploration behavior  maternal behavior  neuronal cell body  positive regulation of neuron differentiation  negative regulation of cell cycle  negative regulation of mitotic cell cycle  negative regulation of neurogenesis  cellular response to retinoic acid  vocalization behavior  
Ontology : EGO-EBIbehavioral fear response  protein binding  cytoplasm  endoplasmic reticulum  cell cycle arrest  short-term memory  cell death  dendrite  social behavior  exploration behavior  maternal behavior  neuronal cell body  positive regulation of neuron differentiation  negative regulation of cell cycle  negative regulation of mitotic cell cycle  negative regulation of neurogenesis  cellular response to retinoic acid  vocalization behavior  
NDEx NetworkBRINP1
Atlas of Cancer Signalling NetworkBRINP1
Wikipedia pathwaysBRINP1
Orthology - Evolution
OrthoDB1620
GeneTree (enSembl)ENSG00000078725
Phylogenetic Trees/Animal Genes : TreeFamBRINP1
HOVERGENO60477
HOGENOMO60477
Homologs : HomoloGeneBRINP1
Homology/Alignments : Family Browser (UCSC)BRINP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRINP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRINP1
dbVarBRINP1
ClinVarBRINP1
1000_GenomesBRINP1 
Exome Variant ServerBRINP1
ExAC (Exome Aggregation Consortium)BRINP1 (select the gene name)
Genetic variants : HAPMAP1620
Genomic Variants (DGV)BRINP1 [DGVbeta]
DECIPHERBRINP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBRINP1 
Mutations
ICGC Data PortalBRINP1 
TCGA Data PortalBRINP1 
Broad Tumor PortalBRINP1
OASIS PortalBRINP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBRINP1
BioMutasearch BRINP1
DgiDB (Drug Gene Interaction Database)BRINP1
DoCM (Curated mutations)BRINP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRINP1 (select a term)
intoGenBRINP1
Cancer3DBRINP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602865   
Orphanet
MedgenBRINP1
Genetic Testing Registry BRINP1
NextProtO60477 [Medical]
TSGene1620
GENETestsBRINP1
Target ValidationBRINP1
Huge Navigator BRINP1 [HugePedia]
snp3D : Map Gene to Disease1620
BioCentury BCIQBRINP1
ClinGenBRINP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1620
Chemical/Pharm GKB GenePA27156
Clinical trialBRINP1
Miscellaneous
canSAR (ICR)BRINP1 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRINP1
EVEXBRINP1
GoPubMedBRINP1
iHOPBRINP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:16 CEST 2017

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