Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BRINP2 (BMP/retinoic acid inducible neural specific 2)

Identity

Alias_namesFAM5B
family with sequence similarity 5, member B
bone morphogenetic protein/retinoic acid inducible neural-specific 2
Alias_symbol (synonym)DBCCR1L2
Other alias
HGNC (Hugo) BRINP2
LocusID (NCBI) 57795
Atlas_Id 60808
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 177171388 and ends at 177282422 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LHX4 (1q25.2) / BRINP2 (1q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRINP2   13746
Cards
Entrez_Gene (NCBI)BRINP2  57795  BMP/retinoic acid inducible neural specific 2
AliasesDBCCR1L2; FAM5B
GeneCards (Weizmann)BRINP2
Ensembl hg19 (Hinxton)ENSG00000198797 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198797 [Gene_View]  chr1:177171388-177282422 [Contig_View]  BRINP2 [Vega]
ICGC DataPortalENSG00000198797
TCGA cBioPortalBRINP2
AceView (NCBI)BRINP2
Genatlas (Paris)BRINP2
WikiGenes57795
SOURCE (Princeton)BRINP2
Genetics Home Reference (NIH)BRINP2
Genomic and cartography
GoldenPath hg38 (UCSC)BRINP2  -     chr1:177171388-177282422 +  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRINP2  -     1q25.2   [Description]    (hg19-Feb_2009)
EnsemblBRINP2 - 1q25.2 [CytoView hg19]  BRINP2 - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBIBRINP2 [Mapview hg19]  BRINP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051534 AB161694 AF131833 AK098386 AK123336
RefSeq transcript (Entrez)NM_021165
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BRINP2
Cluster EST : UnigeneHs.495918 [ NCBI ]
CGAP (NCI)Hs.495918
Alternative Splicing GalleryENSG00000198797
Gene ExpressionBRINP2 [ NCBI-GEO ]   BRINP2 [ EBI - ARRAY_EXPRESS ]   BRINP2 [ SEEK ]   BRINP2 [ MEM ]
Gene Expression Viewer (FireBrowse)BRINP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57795
GTEX Portal (Tissue expression)BRINP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0B6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0B6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0B6
Splice isoforms : SwissVarQ9C0B6
PhosPhoSitePlusQ9C0B6
Domains : Interpro (EBI)BRINP    MACPF   
Domain families : Pfam (Sanger)MACPF (PF01823)   
Domain families : Pfam (NCBI)pfam01823   
Domain families : Smart (EMBL)MACPF (SM00457)  
Conserved Domain (NCBI)BRINP2
DMDM Disease mutations57795
Blocks (Seattle)BRINP2
SuperfamilyQ9C0B6
Human Protein AtlasENSG00000198797
Peptide AtlasQ9C0B6
HPRD13891
IPIIPI00514594   IPI00718979   IPI01013646   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0B6
IntAct (EBI)Q9C0B6
FunCoupENSG00000198797
BioGRIDBRINP2
STRING (EMBL)BRINP2
ZODIACBRINP2
Ontologies - Pathways
QuickGOQ9C0B6
Ontology : AmiGOextracellular region  endoplasmic reticulum  cell cycle arrest  dendrite  neuronal cell body  positive regulation of neuron differentiation  negative regulation of mitotic cell cycle  cellular response to retinoic acid  
Ontology : EGO-EBIextracellular region  endoplasmic reticulum  cell cycle arrest  dendrite  neuronal cell body  positive regulation of neuron differentiation  negative regulation of mitotic cell cycle  cellular response to retinoic acid  
NDEx NetworkBRINP2
Atlas of Cancer Signalling NetworkBRINP2
Wikipedia pathwaysBRINP2
Orthology - Evolution
OrthoDB57795
GeneTree (enSembl)ENSG00000198797
Phylogenetic Trees/Animal Genes : TreeFamBRINP2
HOVERGENQ9C0B6
HOGENOMQ9C0B6
Homologs : HomoloGeneBRINP2
Homology/Alignments : Family Browser (UCSC)BRINP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRINP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRINP2
dbVarBRINP2
ClinVarBRINP2
1000_GenomesBRINP2 
Exome Variant ServerBRINP2
ExAC (Exome Aggregation Consortium)BRINP2 (select the gene name)
Genetic variants : HAPMAP57795
Genomic Variants (DGV)BRINP2 [DGVbeta]
DECIPHERBRINP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBRINP2 
Mutations
ICGC Data PortalBRINP2 
TCGA Data PortalBRINP2 
Broad Tumor PortalBRINP2
OASIS PortalBRINP2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBRINP2
BioMutasearch BRINP2
DgiDB (Drug Gene Interaction Database)BRINP2
DoCM (Curated mutations)BRINP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRINP2 (select a term)
intoGenBRINP2
Cancer3DBRINP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBRINP2
Genetic Testing Registry BRINP2
NextProtQ9C0B6 [Medical]
TSGene57795
GENETestsBRINP2
Target ValidationBRINP2
Huge Navigator BRINP2 [HugePedia]
snp3D : Map Gene to Disease57795
BioCentury BCIQBRINP2
ClinGenBRINP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57795
Chemical/Pharm GKB GenePA142671895
Clinical trialBRINP2
Miscellaneous
canSAR (ICR)BRINP2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRINP2
EVEXBRINP2
GoPubMedBRINP2
iHOPBRINP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:02:28 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.