Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BRINP3 (BMP/retinoic acid inducible neural specific 3)

Identity

Alias_namesFAM5C
family with sequence similarity 5, member C
bone morphogenetic protein/retinoic acid inducible neural-specific 3
Alias_symbol (synonym)DBCCR1L
DBCCR1L1
Other alias
HGNC (Hugo) BRINP3
LocusID (NCBI) 339479
Atlas_Id 46658
Location 1q31.1  [Link to chromosome band 1q31]
Location_base_pair Starts at 190097667 and ends at 190476010 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BRINP3 (1q31.1) / NARS (18q21.31)CAMK2N1 (1p36.12) / BRINP3 (1q31.1)GRAMD1B (11q24.1) / BRINP3 (1q31.1)
XPR1 (1q25.3) / BRINP3 (1q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRINP3   22393
Cards
Entrez_Gene (NCBI)BRINP3  339479  BMP/retinoic acid inducible neural specific 3
AliasesDBCCR1L; DBCCR1L1; FAM5C
GeneCards (Weizmann)BRINP3
Ensembl hg19 (Hinxton)ENSG00000162670 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162670 [Gene_View]  chr1:190097667-190476010 [Contig_View]  BRINP3 [Vega]
ICGC DataPortalENSG00000162670
TCGA cBioPortalBRINP3
AceView (NCBI)BRINP3
Genatlas (Paris)BRINP3
WikiGenes339479
SOURCE (Princeton)BRINP3
Genetics Home Reference (NIH)BRINP3
Genomic and cartography
GoldenPath hg38 (UCSC)BRINP3  -     chr1:190097667-190476010 -  1q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRINP3  -     1q31.1   [Description]    (hg19-Feb_2009)
EnsemblBRINP3 - 1q31.1 [CytoView hg19]  BRINP3 - 1q31.1 [CytoView hg38]
Mapping of homologs : NCBIBRINP3 [Mapview hg19]  BRINP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB111893 AK123024 AK123637 AK294365 BC105052
RefSeq transcript (Entrez)NM_001317188 NM_199051
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BRINP3
Cluster EST : UnigeneHs.65765 [ NCBI ]
CGAP (NCI)Hs.65765
Alternative Splicing GalleryENSG00000162670
Gene ExpressionBRINP3 [ NCBI-GEO ]   BRINP3 [ EBI - ARRAY_EXPRESS ]   BRINP3 [ SEEK ]   BRINP3 [ MEM ]
Gene Expression Viewer (FireBrowse)BRINP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339479
GTEX Portal (Tissue expression)BRINP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ76B58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ76B58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ76B58
Splice isoforms : SwissVarQ76B58
PhosPhoSitePlusQ76B58
Domains : Interpro (EBI)BRINP    Growth_fac_rcpt_    MACPF   
Domain families : Pfam (Sanger)MACPF (PF01823)   
Domain families : Pfam (NCBI)pfam01823   
Domain families : Smart (EMBL)MACPF (SM00457)  
Conserved Domain (NCBI)BRINP3
DMDM Disease mutations339479
Blocks (Seattle)BRINP3
SuperfamilyQ76B58
Human Protein AtlasENSG00000162670
Peptide AtlasQ76B58
HPRD16782
IPIIPI00418887   IPI01014492   IPI00975876   IPI00645531   
Protein Interaction databases
DIP (DOE-UCLA)Q76B58
IntAct (EBI)Q76B58
FunCoupENSG00000162670
BioGRIDBRINP3
STRING (EMBL)BRINP3
ZODIACBRINP3
Ontologies - Pathways
QuickGOQ76B58
Ontology : AmiGOextracellular region  mitochondrion  endoplasmic reticulum  cell cycle arrest  dendrite  neuronal cell body  positive regulation of neuron differentiation  positive regulation of neuron differentiation  negative regulation of mitotic cell cycle  negative regulation of mitotic cell cycle  cellular response to retinoic acid  cellular response to retinoic acid  
Ontology : EGO-EBIextracellular region  mitochondrion  endoplasmic reticulum  cell cycle arrest  dendrite  neuronal cell body  positive regulation of neuron differentiation  positive regulation of neuron differentiation  negative regulation of mitotic cell cycle  negative regulation of mitotic cell cycle  cellular response to retinoic acid  cellular response to retinoic acid  
NDEx NetworkBRINP3
Atlas of Cancer Signalling NetworkBRINP3
Wikipedia pathwaysBRINP3
Orthology - Evolution
OrthoDB339479
GeneTree (enSembl)ENSG00000162670
Phylogenetic Trees/Animal Genes : TreeFamBRINP3
HOVERGENQ76B58
HOGENOMQ76B58
Homologs : HomoloGeneBRINP3
Homology/Alignments : Family Browser (UCSC)BRINP3
Gene fusions - Rearrangements
Fusion : MitelmanXPR1/BRINP3 [1q25.3/1q31.1]  [t(1;1)(q25;q31)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRINP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRINP3
dbVarBRINP3
ClinVarBRINP3
1000_GenomesBRINP3 
Exome Variant ServerBRINP3
ExAC (Exome Aggregation Consortium)BRINP3 (select the gene name)
Genetic variants : HAPMAP339479
Genomic Variants (DGV)BRINP3 [DGVbeta]
DECIPHERBRINP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBRINP3 
Mutations
ICGC Data PortalBRINP3 
TCGA Data PortalBRINP3 
Broad Tumor PortalBRINP3
OASIS PortalBRINP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBRINP3
BioMutasearch BRINP3
DgiDB (Drug Gene Interaction Database)BRINP3
DoCM (Curated mutations)BRINP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRINP3 (select a term)
intoGenBRINP3
Cancer3DBRINP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBRINP3
Genetic Testing Registry BRINP3
NextProtQ76B58 [Medical]
TSGene339479
GENETestsBRINP3
Target ValidationBRINP3
Huge Navigator BRINP3 [HugePedia]
snp3D : Map Gene to Disease339479
BioCentury BCIQBRINP3
ClinGenBRINP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339479
Chemical/Pharm GKB GenePA142671896
Clinical trialBRINP3
Miscellaneous
canSAR (ICR)BRINP3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRINP3
EVEXBRINP3
GoPubMedBRINP3
iHOPBRINP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:25:48 CEST 2017

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