Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BRIP1 (BRCA1 interacting protein C-terminal helicase 1)

Identity

Other namesBACH1
FANCJ
OF
HGNC (Hugo) BRIP1
LocusID (NCBI) 83990
Atlas_Id 840
Location 17q23.2
Location_base_pair Starts at 59756547 and ends at 59940920 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
BCAS3 17q23.2 / BRIP1 17q23.2BRIP1 17q23.2 / CUEDC1 17q22DDX42 17q23.3 / BRIP1 17q23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas)
  Fanconi anaemia Hereditary breast cancer

External links

Nomenclature
HGNC (Hugo)BRIP1   20473
Cards
Entrez_Gene (NCBI)BRIP1  83990  BRCA1 interacting protein C-terminal helicase 1
GeneCards (Weizmann)BRIP1
Ensembl hg19 (Hinxton)ENSG00000136492 [Gene_View]  chr17:59756547-59940920 [Contig_View]  BRIP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136492 [Gene_View]  chr17:59756547-59940920 [Contig_View]  BRIP1 [Vega]
ICGC DataPortalENSG00000136492
TCGA cBioPortalBRIP1
AceView (NCBI)BRIP1
Genatlas (Paris)BRIP1
WikiGenes83990
SOURCE (Princeton)BRIP1
Genomic and cartography
GoldenPath hg19 (UCSC)BRIP1  -     chr17:59756547-59940920 -  17q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BRIP1  -     17q23.2   [Description]    (hg38-Dec_2013)
EnsemblBRIP1 - 17q23.2 [CytoView hg19]  BRIP1 - 17q23.2 [CytoView hg38]
Mapping of homologs : NCBIBRIP1 [Mapview hg19]  BRIP1 [Mapview hg38]
OMIM114480   189960   605882   609054   
Gene and transcription
Genbank (Entrez)AF360549 AK074713 BC101472 BC101474 HQ258538
RefSeq transcript (Entrez)NM_032043
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_007409 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)BRIP1
Cluster EST : UnigeneHs.128903 [ NCBI ]
CGAP (NCI)Hs.128903
Alternative Splicing : Fast-db (Paris)GSHG0013630
Alternative Splicing GalleryENSG00000136492
Gene ExpressionBRIP1 [ NCBI-GEO ]     BRIP1 [ SEEK ]   BRIP1 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)83990
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX63 (Uniprot)
NextProtQ9BX63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX63
Splice isoforms : SwissVarQ9BX63 (Swissvar)
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.13 [ Enzyme-SRS ]   3.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ PRIAM ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   3.6.4.13 [ IUBMB ]
PhosPhoSitePlusQ9BX63
Domaine pattern : Prosite (Expaxy)HELICASE_ATP_BIND_2 (PS51193)   
Domains : Interpro (EBI)ATP-dep_Helicase_C    DEAD_2    DNA_helicase_DNA-repair_Rad3    Helic_SF1/SF2_ATP-bd_DinG/Rad3    Helicase_ATP-bd    P-loop_NTPase   
Domain families : Pfam (Sanger)DEAD_2 (PF06733)    Helicase_C_2 (PF13307)   
Domain families : Pfam (NCBI)pfam06733    pfam13307   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc2 (SM00491)  
DMDM Disease mutations83990
Blocks (Seattle)BRIP1
PDB (SRS)1T15    1T29    3AL3   
PDB (PDBSum)1T15    1T29    3AL3   
PDB (IMB)1T15    1T29    3AL3   
PDB (RSDB)1T15    1T29    3AL3   
Structural Biology KnowledgeBase1T15    1T29    3AL3   
SCOP (Structural Classification of Proteins)1T15    1T29    3AL3   
CATH (Classification of proteins structures)1T15    1T29    3AL3   
Human Protein AtlasENSG00000136492
Peptide AtlasQ9BX63
HPRD05797
IPIIPI00012500   IPI00514398   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX63
IntAct (EBI)Q9BX63
FunCoupENSG00000136492
BioGRIDBRIP1
IntegromeDBBRIP1
STRING (EMBL)BRIP1
ZODIACBRIP1
Ontologies - Pathways
QuickGOQ9BX63
Ontology : AmiGODNA damage checkpoint  double-strand break repair via homologous recombination  DNA binding  ATP-dependent DNA helicase activity  protein binding  ATP binding  nucleus  nucleus  nucleoplasm  cytoplasm  DNA repair  double-strand break repair  double-strand break repair  regulation of transcription from RNA polymerase II promoter  nuclear membrane  DNA duplex unwinding  DNA duplex unwinding  small molecule metabolic process  double-strand break repair via synthesis-dependent strand annealing  metal ion binding  4 iron, 4 sulfur cluster binding  
Ontology : EGO-EBIDNA damage checkpoint  double-strand break repair via homologous recombination  DNA binding  ATP-dependent DNA helicase activity  protein binding  ATP binding  nucleus  nucleus  nucleoplasm  cytoplasm  DNA repair  double-strand break repair  double-strand break repair  regulation of transcription from RNA polymerase II promoter  nuclear membrane  DNA duplex unwinding  DNA duplex unwinding  small molecule metabolic process  double-strand break repair via synthesis-dependent strand annealing  metal ion binding  4 iron, 4 sulfur cluster binding  
Pathways : KEGGFanconi anemia pathway   
Protein Interaction DatabaseBRIP1
Atlas of Cancer Signalling NetworkBRIP1
Wikipedia pathwaysBRIP1
Orthology - Evolution
OrthoDB83990
GeneTree (enSembl)ENSG00000136492
Phylogenetic Trees/Animal Genes : TreeFamBRIP1
Homologs : HomoloGeneBRIP1
Homology/Alignments : Family Browser (UCSC)BRIP1
Gene fusions - Rearrangements
Fusion: TCGABCAS3 17q23.2 BRIP1 17q23.2 BRCA
Fusion: TCGABRIP1 17q23.2 CUEDC1 17q22 BRCA
Fusion: TCGADDX42 17q23.3 BRIP1 17q23.2 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerBRIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRIP1
dbVarBRIP1
ClinVarBRIP1
1000_GenomesBRIP1 
Exome Variant ServerBRIP1
Exome Aggregation Consortium (ExAC)ENSG00000136492
SNP (GeneSNP Utah)BRIP1
SNP : HGBaseBRIP1
Genetic variants : HAPMAPBRIP1
Genomic Variants (DGV)BRIP1 [DGVbeta]
Mutations
ICGC Data PortalBRIP1 
TCGA Data PortalBRIP1 
Tumor PortalBRIP1
TCGA Copy Number PortalBRIP1
Cancer Gene: CensusBRIP1 
Somatic Mutations in Cancer : COSMICBRIP1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Zhejiang University Center for Genetic and Genomic Medicine (ZJU-CGGM)
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch BRIP1
DgiDB (Drug Gene Interaction Database)BRIP1
DoCM (Curated mutations)BRIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRIP1 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:59756547-59940920
CONAN: Copy Number AnalysisBRIP1 
Mutations and Diseases : HGMDBRIP1
OMIM114480    189960    605882    609054   
MedgenBRIP1
NextProtQ9BX63 [Medical]
TSGene83990
GENETestsBRIP1
Huge Navigator BRIP1 [HugePedia]  BRIP1 [HugeCancerGEM]
snp3D : Map Gene to Disease83990
BioCentury BCIQBRIP1
General knowledge
Chemical/Protein Interactions : CTD83990
Chemical/Pharm GKB GenePA134906421
Clinical trialBRIP1
Other databases
Probes
Litterature
PubMed127 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRIP1
GoPubMedBRIP1
iHOPBRIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jan 16 18:14:02 CET 2016

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