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BRIX1 (BRX1, biogenesis of ribosomes)

Identity

Alias_namesBXDC2
brix domain containing 2
BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)
Alias_symbol (synonym)BRIX
FLJ11100
Other alias
HGNC (Hugo) BRIX1
LocusID (NCBI) 55299
Atlas_Id 60809
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 34915820 and ends at 34925787 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRIX1   24170
Cards
Entrez_Gene (NCBI)BRIX1  55299  BRX1, biogenesis of ribosomes
AliasesBRIX; BXDC2
GeneCards (Weizmann)BRIX1
Ensembl hg19 (Hinxton) [Gene_View]  chr5:34915820-34925787 [Contig_View]  BRIX1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:34915820-34925787 [Contig_View]  BRIX1 [Vega]
TCGA cBioPortalBRIX1
AceView (NCBI)BRIX1
Genatlas (Paris)BRIX1
WikiGenes55299
SOURCE (Princeton)BRIX1
Genetics Home Reference (NIH)BRIX1
Genomic and cartography
GoldenPath hg19 (UCSC)BRIX1  -     chr5:34915820-34925787 +  5p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BRIX1  -     5p13.2   [Description]    (hg38-Dec_2013)
EnsemblBRIX1 - 5p13.2 [CytoView hg19]  BRIX1 - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBIBRIX1 [Mapview hg19]  BRIX1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF347667 AK001962 AK289610 AK303311 AK307492
RefSeq transcript (Entrez)NM_018321
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)BRIX1
Cluster EST : UnigeneHs.718510 [ NCBI ]
CGAP (NCI)Hs.718510
Gene ExpressionBRIX1 [ NCBI-GEO ]   BRIX1 [ EBI - ARRAY_EXPRESS ]   BRIX1 [ SEEK ]   BRIX1 [ MEM ]
Gene Expression Viewer (FireBrowse)BRIX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55299
GTEX Portal (Tissue expression)BRIX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDN6
Splice isoforms : SwissVarQ8TDN6
PhosPhoSitePlusQ8TDN6
Domaine pattern : Prosite (Expaxy)BRIX (PS50833)   
Domains : Interpro (EBI)Anticodon-bd    Brix    BRX1   
Domain families : Pfam (Sanger)Brix (PF04427)   
Domain families : Pfam (NCBI)pfam04427   
Domain families : Smart (EMBL)Brix (SM00879)  
Conserved Domain (NCBI)BRIX1
DMDM Disease mutations55299
Blocks (Seattle)BRIX1
SuperfamilyQ8TDN6
Peptide AtlasQ8TDN6
HPRD16563
IPIIPI00181728   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDN6
IntAct (EBI)Q8TDN6
BioGRIDBRIX1
STRING (EMBL)BRIX1
ZODIACBRIX1
Ontologies - Pathways
QuickGOQ8TDN6
Ontology : AmiGOribosomal large subunit assembly  nucleus  nucleolus  poly(A) RNA binding  
Ontology : EGO-EBIribosomal large subunit assembly  nucleus  nucleolus  poly(A) RNA binding  
NDEx NetworkBRIX1
Atlas of Cancer Signalling NetworkBRIX1
Wikipedia pathwaysBRIX1
Orthology - Evolution
OrthoDB55299
Phylogenetic Trees/Animal Genes : TreeFamBRIX1
HOVERGENQ8TDN6
HOGENOMQ8TDN6
Homologs : HomoloGeneBRIX1
Homology/Alignments : Family Browser (UCSC)BRIX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRIX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRIX1
dbVarBRIX1
ClinVarBRIX1
1000_GenomesBRIX1 
Exome Variant ServerBRIX1
ExAC (Exome Aggregation Consortium)BRIX1 (select the gene name)
Genetic variants : HAPMAP55299
Genomic Variants (DGV)BRIX1 [DGVbeta]
DECIPHER (Syndromes)5:34915820-34925787  
CONAN: Copy Number AnalysisBRIX1 
Mutations
ICGC Data PortalBRIX1 
TCGA Data PortalBRIX1 
Broad Tumor PortalBRIX1
OASIS PortalBRIX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBRIX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBRIX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BRIX1
DgiDB (Drug Gene Interaction Database)BRIX1
DoCM (Curated mutations)BRIX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRIX1 (select a term)
intoGenBRIX1
Cancer3DBRIX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBRIX1
Genetic Testing Registry BRIX1
NextProtQ8TDN6 [Medical]
TSGene55299
GENETestsBRIX1
Huge Navigator BRIX1 [HugePedia]
snp3D : Map Gene to Disease55299
BioCentury BCIQBRIX1
ClinGenBRIX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55299
Chemical/Pharm GKB GenePA165660166
Clinical trialBRIX1
Miscellaneous
canSAR (ICR)BRIX1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRIX1
EVEXBRIX1
GoPubMedBRIX1
iHOPBRIX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:03 CET 2017

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