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BRMS1L (breast cancer metastasis-suppressor 1 like)

Identity

Alias_namesBRMS1
breast cancer metastasis-suppressor 1
Alias_symbol (synonym)MGC11296
FLJ39177
Other alias
HGNC (Hugo) BRMS1L
LocusID (NCBI) 84312
Atlas_Id 842
Location 14q13.2  [Link to chromosome band 14q13]
Location_base_pair Starts at 35826391 and ends at 35871963 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(14;14)(q13;q32) BRMS1L/ZNF839


External links

Nomenclature
HGNC (Hugo)BRMS1L   20512
Cards
Entrez_Gene (NCBI)BRMS1L  84312  breast cancer metastasis-suppressor 1 like
AliasesBRMS1
GeneCards (Weizmann)BRMS1L
Ensembl hg19 (Hinxton)ENSG00000100916 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100916 [Gene_View]  ENSG00000100916 [Sequence]  chr14:35826391-35871963 [Contig_View]  BRMS1L [Vega]
ICGC DataPortalENSG00000100916
TCGA cBioPortalBRMS1L
AceView (NCBI)BRMS1L
Genatlas (Paris)BRMS1L
WikiGenes84312
SOURCE (Princeton)BRMS1L
Genetics Home Reference (NIH)BRMS1L
Genomic and cartography
GoldenPath hg38 (UCSC)BRMS1L  -     chr14:35826391-35871963 +  14q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRMS1L  -     14q13.2   [Description]    (hg19-Feb_2009)
EnsemblBRMS1L - 14q13.2 [CytoView hg19]  BRMS1L - 14q13.2 [CytoView hg38]
Mapping of homologs : NCBIBRMS1L [Mapview hg19]  BRMS1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA836514 AK096496 AK297106 AK309431 AK310359
RefSeq transcript (Entrez)NM_032352
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BRMS1L
Cluster EST : UnigeneHs.525299 [ NCBI ]
CGAP (NCI)Hs.525299
Alternative Splicing GalleryENSG00000100916
Gene ExpressionBRMS1L [ NCBI-GEO ]   BRMS1L [ EBI - ARRAY_EXPRESS ]   BRMS1L [ SEEK ]   BRMS1L [ MEM ]
Gene Expression Viewer (FireBrowse)BRMS1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84312
GTEX Portal (Tissue expression)BRMS1L
Human Protein AtlasENSG00000100916-BRMS1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5PSV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5PSV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5PSV4
Splice isoforms : SwissVarQ5PSV4
PhosPhoSitePlusQ5PSV4
Domains : Interpro (EBI)Sds3   
Domain families : Pfam (Sanger)Sds3 (PF08598)   
Domain families : Pfam (NCBI)pfam08598   
Domain families : Smart (EMBL)Sds3 (SM01401)  
Conserved Domain (NCBI)BRMS1L
DMDM Disease mutations84312
Blocks (Seattle)BRMS1L
SuperfamilyQ5PSV4
Human Protein Atlas [tissue]ENSG00000100916-BRMS1L [tissue]
Peptide AtlasQ5PSV4
HPRD16564
IPIIPI00031653   IPI01012061   IPI01021291   IPI01021152   
Protein Interaction databases
DIP (DOE-UCLA)Q5PSV4
IntAct (EBI)Q5PSV4
FunCoupENSG00000100916
BioGRIDBRMS1L
STRING (EMBL)BRMS1L
ZODIACBRMS1L
Ontologies - Pathways
QuickGOQ5PSV4
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  histone deacetylase activity  protein binding  transcription, DNA-templated  histone deacetylation  regulation of growth  histone deacetylase binding  Sin3-type complex  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  histone deacetylase activity  protein binding  transcription, DNA-templated  histone deacetylation  regulation of growth  histone deacetylase binding  Sin3-type complex  
NDEx NetworkBRMS1L
Atlas of Cancer Signalling NetworkBRMS1L
Wikipedia pathwaysBRMS1L
Orthology - Evolution
OrthoDB84312
GeneTree (enSembl)ENSG00000100916
Phylogenetic Trees/Animal Genes : TreeFamBRMS1L
HOVERGENQ5PSV4
HOGENOMQ5PSV4
Homologs : HomoloGeneBRMS1L
Homology/Alignments : Family Browser (UCSC)BRMS1L
Gene fusions - Rearrangements
Fusion : QuiverBRMS1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRMS1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRMS1L
dbVarBRMS1L
ClinVarBRMS1L
1000_GenomesBRMS1L 
Exome Variant ServerBRMS1L
ExAC (Exome Aggregation Consortium)ENSG00000100916
GNOMAD BrowserENSG00000100916
Genetic variants : HAPMAP84312
Genomic Variants (DGV)BRMS1L [DGVbeta]
DECIPHERBRMS1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBRMS1L 
Mutations
ICGC Data PortalBRMS1L 
TCGA Data PortalBRMS1L 
Broad Tumor PortalBRMS1L
OASIS PortalBRMS1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBRMS1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBRMS1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BRMS1L
DgiDB (Drug Gene Interaction Database)BRMS1L
DoCM (Curated mutations)BRMS1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRMS1L (select a term)
intoGenBRMS1L
Cancer3DBRMS1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBRMS1L
MedgenBRMS1L
Genetic Testing Registry BRMS1L
NextProtQ5PSV4 [Medical]
TSGene84312
GENETestsBRMS1L
Target ValidationBRMS1L
Huge Navigator BRMS1L [HugePedia]
snp3D : Map Gene to Disease84312
BioCentury BCIQBRMS1L
ClinGenBRMS1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84312
Chemical/Pharm GKB GenePA134968356
Clinical trialBRMS1L
Miscellaneous
canSAR (ICR)BRMS1L (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRMS1L
EVEXBRMS1L
GoPubMedBRMS1L
iHOPBRMS1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:16:33 CEST 2018

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