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BROX (BRO1 domain and CAAX motif containing)

Identity

Alias_namesC1orf58
chromosome 1 open reading frame 58
Alias_symbol (synonym)FLJ32421
Other alias
HGNC (Hugo) BROX
LocusID (NCBI) 148362
Atlas_Id 60810
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 222712553 and ends at 222735196 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BROX (1q41) / SLC2A10 (20q13.12)MTFR1L (1p36.11) / BROX (1q41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BROX   26512
Cards
Entrez_Gene (NCBI)BROX  148362  BRO1 domain and CAAX motif containing
AliasesC1orf58
GeneCards (Weizmann)BROX
Ensembl hg19 (Hinxton)ENSG00000162819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162819 [Gene_View]  chr1:222712553-222735196 [Contig_View]  BROX [Vega]
ICGC DataPortalENSG00000162819
TCGA cBioPortalBROX
AceView (NCBI)BROX
Genatlas (Paris)BROX
WikiGenes148362
SOURCE (Princeton)BROX
Genetics Home Reference (NIH)BROX
Genomic and cartography
GoldenPath hg38 (UCSC)BROX  -     chr1:222712553-222735196 +  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BROX  -     1q41   [Description]    (hg19-Feb_2009)
EnsemblBROX - 1q41 [CytoView hg19]  BROX - 1q41 [CytoView hg38]
Mapping of homologs : NCBIBROX [Mapview hg19]  BROX [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB276123 AI243754 AI911339 AK025140 AK056983
RefSeq transcript (Entrez)NM_001288579 NM_001288580 NM_001288581 NM_144695
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BROX
Cluster EST : UnigeneHs.600844 [ NCBI ]
CGAP (NCI)Hs.600844
Alternative Splicing GalleryENSG00000162819
Gene ExpressionBROX [ NCBI-GEO ]   BROX [ EBI - ARRAY_EXPRESS ]   BROX [ SEEK ]   BROX [ MEM ]
Gene Expression Viewer (FireBrowse)BROX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148362
GTEX Portal (Tissue expression)BROX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VW32   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VW32  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VW32
Splice isoforms : SwissVarQ5VW32
PhosPhoSitePlusQ5VW32
Domaine pattern : Prosite (Expaxy)BRO1 (PS51180)   
Domains : Interpro (EBI)BRO1_dom   
Domain families : Pfam (Sanger)BRO1 (PF03097)   
Domain families : Pfam (NCBI)pfam03097   
Domain families : Smart (EMBL)BRO1 (SM01041)  
Conserved Domain (NCBI)BROX
DMDM Disease mutations148362
Blocks (Seattle)BROX
PDB (SRS)3R9M    3ULY    3UM0    3UM1    3UM2    3UM3    3ZXP   
PDB (PDBSum)3R9M    3ULY    3UM0    3UM1    3UM2    3UM3    3ZXP   
PDB (IMB)3R9M    3ULY    3UM0    3UM1    3UM2    3UM3    3ZXP   
PDB (RSDB)3R9M    3ULY    3UM0    3UM1    3UM2    3UM3    3ZXP   
Structural Biology KnowledgeBase3R9M    3ULY    3UM0    3UM1    3UM2    3UM3    3ZXP   
SCOP (Structural Classification of Proteins)3R9M    3ULY    3UM0    3UM1    3UM2    3UM3    3ZXP   
CATH (Classification of proteins structures)3R9M    3ULY    3UM0    3UM1    3UM2    3UM3    3ZXP   
SuperfamilyQ5VW32
Human Protein AtlasENSG00000162819
Peptide AtlasQ5VW32
HPRD08725
IPIIPI00065500   IPI00922787   IPI00644855   
Protein Interaction databases
DIP (DOE-UCLA)Q5VW32
IntAct (EBI)Q5VW32
FunCoupENSG00000162819
BioGRIDBROX
STRING (EMBL)BROX
ZODIACBROX
Ontologies - Pathways
QuickGOQ5VW32
Ontology : AmiGOmembrane  extracellular exosome  
Ontology : EGO-EBImembrane  extracellular exosome  
NDEx NetworkBROX
Atlas of Cancer Signalling NetworkBROX
Wikipedia pathwaysBROX
Orthology - Evolution
OrthoDB148362
GeneTree (enSembl)ENSG00000162819
Phylogenetic Trees/Animal Genes : TreeFamBROX
HOVERGENQ5VW32
HOGENOMQ5VW32
Homologs : HomoloGeneBROX
Homology/Alignments : Family Browser (UCSC)BROX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBROX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BROX
dbVarBROX
ClinVarBROX
1000_GenomesBROX 
Exome Variant ServerBROX
ExAC (Exome Aggregation Consortium)BROX (select the gene name)
Genetic variants : HAPMAP148362
Genomic Variants (DGV)BROX [DGVbeta]
DECIPHERBROX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBROX 
Mutations
ICGC Data PortalBROX 
TCGA Data PortalBROX 
Broad Tumor PortalBROX
OASIS PortalBROX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBROX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBROX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BROX
DgiDB (Drug Gene Interaction Database)BROX
DoCM (Curated mutations)BROX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BROX (select a term)
intoGenBROX
Cancer3DBROX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBROX
Genetic Testing Registry BROX
NextProtQ5VW32 [Medical]
TSGene148362
GENETestsBROX
Target ValidationBROX
Huge Navigator BROX [HugePedia]
snp3D : Map Gene to Disease148362
BioCentury BCIQBROX
ClinGenBROX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148362
Chemical/Pharm GKB GenePA142672509
Clinical trialBROX
Miscellaneous
canSAR (ICR)BROX (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBROX
EVEXBROX
GoPubMedBROX
iHOPBROX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:28 CEST 2017

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