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BRPF3 (bromodomain and PHD finger containing 3)

Identity

Alias_namesbromodomain and PHD finger containing, 3
Alias_symbol (synonym)KIAA1286
Other alias-
HGNC (Hugo) BRPF3
LocusID (NCBI) 27154
Atlas_Id 60811
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 36196773 and ends at 36232790 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATN1 (12p13.31) / BRPF3 (6p21.31)BRPF3 (6p21.31) / HLA-DMA (6p21.32)BRPF3 (6p21.31) / N4BP2L2 (13q13.1)
BRPF3 (6p21.31) / STARD9 (15q15.2)BRPF3 (6p21.31) / ZFAND3 (6p21.2)UBE2E2 (3p24.3) / BRPF3 (6p21.31)
BRPF3 HLA-DMABRPF3 STARD9

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(6;6)(p21;p21) BRPF3/HLA-DMA
t(6;6)(p21;p21) BRPF3/ZFAND3
t(6;15)(p21;q15) BRPF3/STARD9


External links

Nomenclature
HGNC (Hugo)BRPF3   14256
Cards
Entrez_Gene (NCBI)BRPF3  27154  bromodomain and PHD finger containing 3
Aliases
GeneCards (Weizmann)BRPF3
Ensembl hg19 (Hinxton)ENSG00000096070 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000096070 [Gene_View]  ENSG00000096070 [Sequence]  chr6:36196773-36232790 [Contig_View]  BRPF3 [Vega]
ICGC DataPortalENSG00000096070
TCGA cBioPortalBRPF3
AceView (NCBI)BRPF3
Genatlas (Paris)BRPF3
WikiGenes27154
SOURCE (Princeton)BRPF3
Genetics Home Reference (NIH)BRPF3
Genomic and cartography
GoldenPath hg38 (UCSC)BRPF3  -     chr6:36196773-36232790 +  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRPF3  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblBRPF3 - 6p21.31 [CytoView hg19]  BRPF3 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBIBRPF3 [Mapview hg19]  BRPF3 [Mapview hg38]
OMIM616856   
Gene and transcription
Genbank (Entrez)AB033112 AK000751 AK025134 AK025224 AK074362
RefSeq transcript (Entrez)NM_015695
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BRPF3
Cluster EST : UnigeneHs.520096 [ NCBI ]
CGAP (NCI)Hs.520096
Alternative Splicing GalleryENSG00000096070
Gene ExpressionBRPF3 [ NCBI-GEO ]   BRPF3 [ EBI - ARRAY_EXPRESS ]   BRPF3 [ SEEK ]   BRPF3 [ MEM ]
Gene Expression Viewer (FireBrowse)BRPF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27154
GTEX Portal (Tissue expression)BRPF3
Human Protein AtlasENSG00000096070-BRPF3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULD4
Splice isoforms : SwissVarQ9ULD4
PhosPhoSitePlusQ9ULD4
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)    EPHD (PS51805)    PWWP (PS50812)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Bromodomain    Bromodomain_CS    Enhancer_polycomb-like_N    PWWP_dom    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Bromodomain (PF00439)    EPL1 (PF10513)    PWWP (PF00855)   
Domain families : Pfam (NCBI)pfam00439    pfam10513    pfam00855   
Domain families : Smart (EMBL)BROMO (SM00297)  PHD (SM00249)  PWWP (SM00293)  
Conserved Domain (NCBI)BRPF3
DMDM Disease mutations27154
Blocks (Seattle)BRPF3
PDB (SRS)3PFS   
PDB (PDBSum)3PFS   
PDB (IMB)3PFS   
PDB (RSDB)3PFS   
Structural Biology KnowledgeBase3PFS   
SCOP (Structural Classification of Proteins)3PFS   
CATH (Classification of proteins structures)3PFS   
SuperfamilyQ9ULD4
Human Protein Atlas [tissue]ENSG00000096070-BRPF3 [tissue]
Peptide AtlasQ9ULD4
HPRD16565
IPIIPI00008054   IPI01015684   IPI00981055   IPI00014899   IPI00879380   IPI00879985   IPI00879064   IPI00879179   IPI00873538   IPI00974109   IPI01012995   IPI00977223   IPI00978569   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULD4
IntAct (EBI)Q9ULD4
FunCoupENSG00000096070
BioGRIDBRPF3
STRING (EMBL)BRPF3
ZODIACBRPF3
Ontologies - Pathways
QuickGOQ9ULD4
Ontology : AmiGOplatelet degranulation  protein binding  extracellular region  cytosol  zinc ion binding  histone H3 acetylation  MOZ/MORF histone acetyltransferase complex  
Ontology : EGO-EBIplatelet degranulation  protein binding  extracellular region  cytosol  zinc ion binding  histone H3 acetylation  MOZ/MORF histone acetyltransferase complex  
NDEx NetworkBRPF3
Atlas of Cancer Signalling NetworkBRPF3
Wikipedia pathwaysBRPF3
Orthology - Evolution
OrthoDB27154
GeneTree (enSembl)ENSG00000096070
Phylogenetic Trees/Animal Genes : TreeFamBRPF3
HOVERGENQ9ULD4
HOGENOMQ9ULD4
Homologs : HomoloGeneBRPF3
Homology/Alignments : Family Browser (UCSC)BRPF3
Gene fusions - Rearrangements
Fusion PortalBRPF3 HLA-DMA
Fusion PortalBRPF3 STARD9
Fusion : QuiverBRPF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRPF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRPF3
dbVarBRPF3
ClinVarBRPF3
1000_GenomesBRPF3 
Exome Variant ServerBRPF3
ExAC (Exome Aggregation Consortium)ENSG00000096070
GNOMAD BrowserENSG00000096070
Varsome BrowserBRPF3
Genetic variants : HAPMAP27154
Genomic Variants (DGV)BRPF3 [DGVbeta]
DECIPHERBRPF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBRPF3 
Mutations
ICGC Data PortalBRPF3 
TCGA Data PortalBRPF3 
Broad Tumor PortalBRPF3
OASIS PortalBRPF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBRPF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBRPF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BRPF3
DgiDB (Drug Gene Interaction Database)BRPF3
DoCM (Curated mutations)BRPF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRPF3 (select a term)
intoGenBRPF3
Cancer3DBRPF3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616856   
Orphanet
DisGeNETBRPF3
MedgenBRPF3
Genetic Testing Registry BRPF3
NextProtQ9ULD4 [Medical]
TSGene27154
GENETestsBRPF3
Target ValidationBRPF3
Huge Navigator BRPF3 [HugePedia]
snp3D : Map Gene to Disease27154
BioCentury BCIQBRPF3
ClinGenBRPF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27154
Chemical/Pharm GKB GenePA25425
Clinical trialBRPF3
Miscellaneous
canSAR (ICR)BRPF3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRPF3
EVEXBRPF3
GoPubMedBRPF3
iHOPBRPF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:37:04 CEST 2018

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