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BRS3 (bombesin like receptor 3)

Identity

Alias_namesbombesin like receptor 3
Alias_symbol (synonym)BB3
BB3R
Other alias
HGNC (Hugo) BRS3
LocusID (NCBI) 680
Atlas_Id 45724
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135570125 and ends at 135574598 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HTATSF1 (Xq26.3) / BRS3 (Xq26.3)HTATSF1 Xq26.3 / BRS3 Xq26.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BRS3   1113
Cards
Entrez_Gene (NCBI)BRS3  680  bombesin like receptor 3
AliasesBB3
GeneCards (Weizmann)BRS3
Ensembl hg19 (Hinxton)ENSG00000102239 [Gene_View]  chrX:135570125-135574598 [Contig_View]  BRS3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000102239 [Gene_View]  chrX:135570125-135574598 [Contig_View]  BRS3 [Vega]
ICGC DataPortalENSG00000102239
TCGA cBioPortalBRS3
AceView (NCBI)BRS3
Genatlas (Paris)BRS3
WikiGenes680
SOURCE (Princeton)BRS3
Genetics Home Reference (NIH)BRS3
Genomic and cartography
GoldenPath hg19 (UCSC)BRS3  -     chrX:135570125-135574598 +  Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BRS3  -     Xq26.3   [Description]    (hg38-Dec_2013)
EnsemblBRS3 - Xq26.3 [CytoView hg19]  BRS3 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIBRS3 [Mapview hg19]  BRS3 [Mapview hg38]
OMIM300107   
Gene and transcription
Genbank (Entrez)AY585193 BC152938 L08893
RefSeq transcript (Entrez)NM_001727
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)BRS3
Cluster EST : UnigeneHs.121484 [ NCBI ]
CGAP (NCI)Hs.121484
Alternative Splicing GalleryENSG00000102239
Gene ExpressionBRS3 [ NCBI-GEO ]   BRS3 [ EBI - ARRAY_EXPRESS ]   BRS3 [ SEEK ]   BRS3 [ MEM ]
Gene Expression Viewer (FireBrowse)BRS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)680
GTEX Portal (Tissue expression)BRS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP32247   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP32247  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP32247
Splice isoforms : SwissVarP32247
PhosPhoSitePlusP32247
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)Bombesin_rcpt_3    Bombsn_rcpt-like    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)BRS3
DMDM Disease mutations680
Blocks (Seattle)BRS3
SuperfamilyP32247
Human Protein AtlasENSG00000102239
Peptide AtlasP32247
HPRD02116
IPIIPI00027686   
Protein Interaction databases
DIP (DOE-UCLA)P32247
IntAct (EBI)P32247
FunCoupENSG00000102239
BioGRIDBRS3
STRING (EMBL)BRS3
ZODIACBRS3
Ontologies - Pathways
QuickGOP32247
Ontology : AmiGObombesin receptor activity  plasma membrane  glucose metabolic process  regulation of blood pressure  adult feeding behavior  integral component of membrane  bombesin receptor signaling pathway  neuron projection  neuronal cell body  
Ontology : EGO-EBIbombesin receptor activity  plasma membrane  glucose metabolic process  regulation of blood pressure  adult feeding behavior  integral component of membrane  bombesin receptor signaling pathway  neuron projection  neuronal cell body  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkBRS3
Atlas of Cancer Signalling NetworkBRS3
Wikipedia pathwaysBRS3
Orthology - Evolution
OrthoDB680
GeneTree (enSembl)ENSG00000102239
Phylogenetic Trees/Animal Genes : TreeFamBRS3
HOVERGENP32247
HOGENOMP32247
Homologs : HomoloGeneBRS3
Homology/Alignments : Family Browser (UCSC)BRS3
Gene fusions - Rearrangements
Fusion : MitelmanHTATSF1/BRS3 [Xq26.3/Xq26.3]  [t(X;X)(q26;q26)]  
Fusion: TCGAHTATSF1 Xq26.3 BRS3 Xq26.3 BRCA LUAD THCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRS3
dbVarBRS3
ClinVarBRS3
1000_GenomesBRS3 
Exome Variant ServerBRS3
ExAC (Exome Aggregation Consortium)BRS3 (select the gene name)
Genetic variants : HAPMAP680
Genomic Variants (DGV)BRS3 [DGVbeta]
DECIPHER (Syndromes)X:135570125-135574598  ENSG00000102239
CONAN: Copy Number AnalysisBRS3 
Mutations
ICGC Data PortalBRS3 
TCGA Data PortalBRS3 
Broad Tumor PortalBRS3
OASIS PortalBRS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBRS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBRS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BRS3
DgiDB (Drug Gene Interaction Database)BRS3
DoCM (Curated mutations)BRS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRS3 (select a term)
intoGenBRS3
Cancer3DBRS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300107   
Orphanet
MedgenBRS3
Genetic Testing Registry BRS3
NextProtP32247 [Medical]
TSGene680
GENETestsBRS3
Huge Navigator BRS3 [HugePedia]
snp3D : Map Gene to Disease680
BioCentury BCIQBRS3
ClinGenBRS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD680
Chemical/Pharm GKB GenePA25427
Clinical trialBRS3
Miscellaneous
canSAR (ICR)BRS3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRS3
EVEXBRS3
GoPubMedBRS3
iHOPBRS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:57:52 CET 2017

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