Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BRWD1-IT2 (BRWD1 intronic transcript 2 (non-protein coding))

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 103091865
Atlas_Id 60813
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 40685833 and ends at 40686841 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)BRWD1-IT2  103091865  BRWD1 intronic transcript 2 (non-protein coding)
Aliases
GeneCards (Weizmann)BRWD1-IT2
Ensembl hg19 (Hinxton)ENSG00000255568 [Gene_View]  chr21:40685833-40686841 [Contig_View]  BRWD1-IT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000255568 [Gene_View]  chr21:40685833-40686841 [Contig_View]  BRWD1-IT2 [Vega]
ICGC DataPortalENSG00000255568
TCGA cBioPortalBRWD1-IT2
AceView (NCBI)BRWD1-IT2
Genatlas (Paris)BRWD1-IT2
WikiGenes103091865
SOURCE (Princeton)BRWD1-IT2
Genetics Home Reference (NIH)BRWD1-IT2
Genomic and cartography
GoldenPath hg19 (UCSC)BRWD1-IT2  -     chr21:40685833-40686841 +  21q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BRWD1-IT2  -     21q22.2   [Description]    (hg38-Dec_2013)
EnsemblBRWD1-IT2 - 21q22.2 [CytoView hg19]  BRWD1-IT2 - 21q22.2 [CytoView hg38]
Mapping of homologs : NCBIBRWD1-IT2 [Mapview hg19]  BRWD1-IT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA281157 HG511822 HY025107
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)BRWD1-IT2
Cluster EST : UnigeneHs.729612 [ NCBI ]
CGAP (NCI)Hs.729612
Alternative Splicing GalleryENSG00000255568
Gene ExpressionBRWD1-IT2 [ NCBI-GEO ]   BRWD1-IT2 [ EBI - ARRAY_EXPRESS ]   BRWD1-IT2 [ SEEK ]   BRWD1-IT2 [ MEM ]
Gene Expression Viewer (FireBrowse)BRWD1-IT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)103091865
GTEX Portal (Tissue expression)BRWD1-IT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59051   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59051  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59051
Splice isoforms : SwissVarP59051
PhosPhoSitePlusP59051
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BRWD1-IT2
DMDM Disease mutations103091865
Blocks (Seattle)BRWD1-IT2
SuperfamilyP59051
Human Protein AtlasENSG00000255568
Peptide AtlasP59051
Protein Interaction databases
DIP (DOE-UCLA)P59051
IntAct (EBI)P59051
FunCoupENSG00000255568
BioGRIDBRWD1-IT2
STRING (EMBL)BRWD1-IT2
ZODIACBRWD1-IT2
Ontologies - Pathways
QuickGOP59051
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkBRWD1-IT2
Atlas of Cancer Signalling NetworkBRWD1-IT2
Wikipedia pathwaysBRWD1-IT2
Orthology - Evolution
OrthoDB103091865
GeneTree (enSembl)ENSG00000255568
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENP59051
HOGENOMP59051
Homologs : HomoloGeneBRWD1-IT2
Homology/Alignments : Family Browser (UCSC)BRWD1-IT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBRWD1-IT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BRWD1-IT2
dbVarBRWD1-IT2
ClinVarBRWD1-IT2
1000_GenomesBRWD1-IT2 
Exome Variant ServerBRWD1-IT2
ExAC (Exome Aggregation Consortium)BRWD1-IT2 (select the gene name)
Genetic variants : HAPMAP103091865
Genomic Variants (DGV)BRWD1-IT2 [DGVbeta]
DECIPHER (Syndromes)21:40685833-40686841  ENSG00000255568
CONAN: Copy Number AnalysisBRWD1-IT2 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBRWD1-IT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BRWD1-IT2
DgiDB (Drug Gene Interaction Database)BRWD1-IT2
DoCM (Curated mutations)BRWD1-IT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BRWD1-IT2 (select a term)
intoGenBRWD1-IT2
Cancer3DBRWD1-IT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBRWD1-IT2
Genetic Testing Registry BRWD1-IT2
NextProtP59051 [Medical]
TSGene103091865
GENETestsBRWD1-IT2
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease103091865
BioCentury BCIQBRWD1-IT2
ClinGenBRWD1-IT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103091865
Clinical trialBRWD1-IT2
Miscellaneous
canSAR (ICR)BRWD1-IT2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBRWD1-IT2
EVEXBRWD1-IT2
GoPubMedBRWD1-IT2
iHOPBRWD1-IT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:04 CET 2017

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