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BRWD1 (bromodomain and WD repeat domain containing 1)

Identity

Alias (NCBI)C21orf107
DCAF19
N143
WDR9
WRD9
HGNC (Hugo) BRWD1
HGNC Alias symbFLJ11315
N143
DCAF19
HGNC Previous nameC21orf107
 WDR9
HGNC Previous namechromosome 21 open reading frame 107
 WD repeat domain 9
LocusID (NCBI) 54014
Atlas_Id 54159
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 39185482 and ends at 39313632 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BRWD1 (21q22.2) / ABCA10 (17q24.3)BRWD1 (21q22.2) / ABCG1 (21q22.3)BRWD1 (21q22.2) / AHR (7p21.1)
BRWD1 (21q22.2) / APOL1 (22q12.3)BRWD1 (21q22.2) / CEP112 (17q24.1)BRWD1 (21q22.2) / CTDNEP1 (17p13.1)
BRWD1 (21q22.2) / DYRK1A (21q22.13)BRWD1 (21q22.2) / GSS (20q11.22)BRWD1 (21q22.2) / HLCS (21q22.13)
BRWD1 (21q22.2) / HUNK (21q22.11)BRWD1 (21q22.2) / LCA5L (21q22.2)BRWD1 (21q22.2) / SMC1A (Xp11.22)
BRWD1 (21q22.2) / WDR4 (21q22.3)CALD1 (7q33) / BRWD1 (21q22.2)DYRK1A (21q22.13) / BRWD1 (21q22.2)
GPM6A (4q34.2) / BRWD1 (21q22.2)MED13 (17q23.2) / BRWD1 (21q22.2)MTMR3 (22q12.2) / BRWD1 (21q22.2)
SLC25A28 (10q24.2) / BRWD1 (21q22.2)TRAPPC10 (21q22.3) / BRWD1 (21q22.2)TTC3 (21q22.13) / BRWD1 (21q22.2)
BRWD1 21q22.2 / ABCA10 17q24.3BRWD1 21q22.2 / ABCG1 21q22.3BRWD1 21q22.2 / DYRK1A 21q22.13
BRWD1 21q22.2 / HUNK 21q22.11BRWD1 21q22.2 / LCA5L 21q22.2BRWD1 21q22.2 / SMC1A Xp11.22
BRWD1 21q22.2 / WDR4 21q22.3DYRK1A 21q22.13 / BRWD1 21q22.2TRAPPC10 21q22.3 / BRWD1 21q22.2
TTC3 21q22.13 / BRWD1 21q22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(21;21)(q22;q22) BRWD1/ETS2


External links

Nomenclature
HGNC (Hugo)BRWD1   12760
Cards
Entrez_Gene (NCBI)BRWD1    bromodomain and WD repeat domain containing 1
AliasesC21orf107; DCAF19; N143; WDR9; 
WRD9
GeneCards (Weizmann)BRWD1
Ensembl hg19 (Hinxton)ENSG00000185658 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185658 [Gene_View]  ENSG00000185658 [Sequence]  chr21:39185482-39313632 [Contig_View]  BRWD1 [Vega]
ICGC DataPortalENSG00000185658
TCGA cBioPortalBRWD1
AceView (NCBI)BRWD1
Genatlas (Paris)BRWD1
SOURCE (Princeton)BRWD1
Genetics Home Reference (NIH)BRWD1
Genomic and cartography
GoldenPath hg38 (UCSC)BRWD1  -     chr21:39185482-39313632 -  21q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BRWD1  -     21q22.2   [Description]    (hg19-Feb_2009)
GoldenPathBRWD1 - 21q22.2 [CytoView hg19]  BRWD1 - 21q22.2 [CytoView hg38]
ImmunoBaseENSG00000185658
Genome Data Viewer NCBIBRWD1 [Mapview hg19]  
OMIM617824   
Gene and transcription
Genbank (Entrez)AA807344 AB080586 AB080587 AB080588 AB080589
RefSeq transcript (Entrez)NM_001007246 NM_018963 NM_033656
Consensus coding sequences : CCDS (NCBI)BRWD1
Gene ExpressionBRWD1 [ NCBI-GEO ]   BRWD1 [ EBI - ARRAY_EXPRESS ]   BRWD1 [ SEEK ]   BRWD1 [ MEM ]
Gene Expression Viewer (FireBrowse)BRWD1 [ Firebrowse - Broad ]
GenevisibleExpression of BRWD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54014
GTEX Portal (Tissue expression)BRWD1
Human Protein AtlasENSG00000185658-BRWD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BRWD1
Human Protein Atlas [tissue]ENSG00000185658-BRWD1 [tissue]
HPRD11683
Protein Interaction databases
BioGRIDBRWD1
STRING (EMBL)BRWD1
ZODIACBRWD1
Ontologies - Pathways
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBRWD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:01:29 CEST 2021

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