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BSDC1 (BSD domain containing 1)

Identity

Alias_symbol (synonym)FLJ10276
RP4-811H24.7
Other alias-
HGNC (Hugo) BSDC1
LocusID (NCBI) 55108
Atlas_Id 60815
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 32364633 and ends at 32394461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARAP3 (5q31.3) / BSDC1 (1p35.1)BSDC1 (1p35.1) / HDAC1 (1p35.1)BSDC1 (1p35.1) / PDLIM5 (4q22.3)
BSDC1 (1p35.1) / UBE2O (17q25.1)BSDC1 (1p35.1) / YARS (1p35.1)BSDC1 YARS
BSDC1 HDAC1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BSDC1   25501
Cards
Entrez_Gene (NCBI)BSDC1  55108  BSD domain containing 1
Aliases
GeneCards (Weizmann)BSDC1
Ensembl hg19 (Hinxton)ENSG00000160058 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160058 [Gene_View]  chr1:32364633-32394461 [Contig_View]  BSDC1 [Vega]
ICGC DataPortalENSG00000160058
TCGA cBioPortalBSDC1
AceView (NCBI)BSDC1
Genatlas (Paris)BSDC1
WikiGenes55108
SOURCE (Princeton)BSDC1
Genetics Home Reference (NIH)BSDC1
Genomic and cartography
GoldenPath hg38 (UCSC)BSDC1  -     chr1:32364633-32394461 -  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BSDC1  -     1p35.1   [Description]    (hg19-Feb_2009)
EnsemblBSDC1 - 1p35.1 [CytoView hg19]  BSDC1 - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIBSDC1 [Mapview hg19]  BSDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001138 AK021440 AK225026 AK225717 AK293454
RefSeq transcript (Entrez)NM_001143888 NM_001143889 NM_001143890 NM_001300958 NM_018045
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BSDC1
Cluster EST : UnigeneHs.353454 [ NCBI ]
CGAP (NCI)Hs.353454
Alternative Splicing GalleryENSG00000160058
Gene ExpressionBSDC1 [ NCBI-GEO ]   BSDC1 [ EBI - ARRAY_EXPRESS ]   BSDC1 [ SEEK ]   BSDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)BSDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55108
GTEX Portal (Tissue expression)BSDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NW68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NW68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NW68
Splice isoforms : SwissVarQ9NW68
PhosPhoSitePlusQ9NW68
Domaine pattern : Prosite (Expaxy)BSD (PS50858)   
Domains : Interpro (EBI)BSD_dom   
Domain families : Pfam (Sanger)BSD (PF03909)   
Domain families : Pfam (NCBI)pfam03909   
Domain families : Smart (EMBL)BSD (SM00751)  
Conserved Domain (NCBI)BSDC1
DMDM Disease mutations55108
Blocks (Seattle)BSDC1
SuperfamilyQ9NW68
Human Protein AtlasENSG00000160058
Peptide AtlasQ9NW68
HPRD07658
IPIIPI00414093   IPI00844452   IPI00018026   IPI00844593   IPI00844524   IPI00844527   IPI00941916   IPI00909833   IPI00908918   IPI00910319   IPI00910328   IPI00985125   IPI00983211   IPI00984538   
Protein Interaction databases
DIP (DOE-UCLA)Q9NW68
IntAct (EBI)Q9NW68
FunCoupENSG00000160058
BioGRIDBSDC1
STRING (EMBL)BSDC1
ZODIACBSDC1
Ontologies - Pathways
QuickGOQ9NW68
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkBSDC1
Atlas of Cancer Signalling NetworkBSDC1
Wikipedia pathwaysBSDC1
Orthology - Evolution
OrthoDB55108
GeneTree (enSembl)ENSG00000160058
Phylogenetic Trees/Animal Genes : TreeFamBSDC1
HOVERGENQ9NW68
HOGENOMQ9NW68
Homologs : HomoloGeneBSDC1
Homology/Alignments : Family Browser (UCSC)BSDC1
Gene fusions - Rearrangements
Fusion: TCGABSDC1 YARS
Fusion: TCGABSDC1 HDAC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBSDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BSDC1
dbVarBSDC1
ClinVarBSDC1
1000_GenomesBSDC1 
Exome Variant ServerBSDC1
ExAC (Exome Aggregation Consortium)BSDC1 (select the gene name)
Genetic variants : HAPMAP55108
Genomic Variants (DGV)BSDC1 [DGVbeta]
DECIPHERBSDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBSDC1 
Mutations
ICGC Data PortalBSDC1 
TCGA Data PortalBSDC1 
Broad Tumor PortalBSDC1
OASIS PortalBSDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBSDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBSDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BSDC1
DgiDB (Drug Gene Interaction Database)BSDC1
DoCM (Curated mutations)BSDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BSDC1 (select a term)
intoGenBSDC1
Cancer3DBSDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBSDC1
Genetic Testing Registry BSDC1
NextProtQ9NW68 [Medical]
TSGene55108
GENETestsBSDC1
Target ValidationBSDC1
Huge Navigator BSDC1 [HugePedia]
snp3D : Map Gene to Disease55108
BioCentury BCIQBSDC1
ClinGenBSDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55108
Chemical/Pharm GKB GenePA142672548
Clinical trialBSDC1
Miscellaneous
canSAR (ICR)BSDC1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBSDC1
EVEXBSDC1
GoPubMedBSDC1
iHOPBSDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 15:39:55 CEST 2017

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