Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BSG (basigin (Ok blood group))

Identity

Other names5F7
CD147
EMMPRIN
M6
OK
TCSF
HGNC (Hugo) BSG
LocusID (NCBI) 682
Location 19p13.3
Location_base_pair Starts at 572454 and ends at 583493 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BSG   1116
Cards
Entrez_Gene (NCBI)BSG  682  basigin (Ok blood group)
GeneCards (Weizmann)BSG
Ensembl (Hinxton)ENSG00000172270 [Gene_View]  chr19:572454-583493 [Contig_View]  BSG [Vega]
ICGC DataPortalENSG00000172270
cBioPortalBSG
AceView (NCBI)BSG
Genatlas (Paris)BSG
WikiGenes682
SOURCE (Princeton)NM_001728 NM_198589 NM_198590 NM_198591
Genomic and cartography
GoldenPath (UCSC)BSG  -  19p13.3   chr19:572454-583493 +  19p13.3   [Description]    (hg19-Feb_2009)
EnsemblBSG - 19p13.3 [CytoView]
Mapping of homologs : NCBIBSG [Mapview]
OMIM109480   111380   
Gene and transcription
Genbank (Entrez)AB072923 AB085790 AB091680 AF548371 AK095912
RefSeq transcript (Entrez)NM_001728 NM_198589 NM_198590 NM_198591
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_007468 NT_011295 NW_001838476 NW_004929412
Consensus coding sequences : CCDS (NCBI)BSG
Cluster EST : UnigeneHs.501293 [ NCBI ]
CGAP (NCI)Hs.501293
Alternative Splicing : Fast-db (Paris)GSHG0014399
Alternative Splicing GalleryENSG00000172270
Gene ExpressionBSG [ NCBI-GEO ]     BSG [ SEEK ]   BSG [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35613 (Uniprot)
NextProtP35613  [Medical]
With graphics : InterProP35613
Splice isoforms : SwissVarP35613 (Swissvar)
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Basigin [organisation]   Ig-like_dom [organisation]   Ig-like_fold [organisation]   Ig_I-set [organisation]   Ig_sub [organisation]   Ig_sub2 [organisation]  
Related proteins : CluSTrP35613
Domain families : Pfam (Sanger)I-set (PF07679)   
Domain families : Pfam (NCBI)pfam07679   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
DMDM Disease mutations682
Blocks (Seattle)P35613
PDB (SRS)3B5H    3I84    3I85    3QQN    3QR2   
PDB (PDBSum)3B5H    3I84    3I85    3QQN    3QR2   
PDB (IMB)3B5H    3I84    3I85    3QQN    3QR2   
PDB (RSDB)3B5H    3I84    3I85    3QQN    3QR2   
Human Protein AtlasENSG00000172270 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP35613
HPRD00176
IPIIPI00218019   IPI00019906   IPI00908477   IPI01010766   IPI00394877   
Protein Interaction databases
DIP (DOE-UCLA)P35613
IntAct (EBI)P35613
FunCoupENSG00000172270
BioGRIDBSG
InParanoidP35613
Interologous Interaction database P35613
IntegromeDBBSG
STRING (EMBL)BSG
Ontologies - Pathways
Ontology : AmiGOGolgi membrane  acrosomal membrane  protein binding  mannose binding  mitochondrion  plasma membrane  integral component of plasma membrane  pyruvate metabolic process  cell surface receptor signaling pathway  embryo implantation  blood coagulation  membrane  extracellular matrix disassembly  extracellular matrix organization  sarcolemma  melanosome  odontogenesis of dentin-containing tooth  response to peptide hormone  cellular metabolic process  small molecule metabolic process  membrane raft  response to mercury ion  decidualization  leukocyte migration  response to cAMP  extracellular vesicular exosome  protein targeting to plasma membrane  
Ontology : EGO-EBIGolgi membrane  acrosomal membrane  protein binding  mannose binding  mitochondrion  plasma membrane  integral component of plasma membrane  pyruvate metabolic process  cell surface receptor signaling pathway  embryo implantation  blood coagulation  membrane  extracellular matrix disassembly  extracellular matrix organization  sarcolemma  melanosome  odontogenesis of dentin-containing tooth  response to peptide hormone  cellular metabolic process  small molecule metabolic process  membrane raft  response to mercury ion  decidualization  leukocyte migration  response to cAMP  extracellular vesicular exosome  protein targeting to plasma membrane  
Protein Interaction DatabaseBSG
Wikipedia pathwaysBSG
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BSG
snp3D : Map Gene to Disease682
SNP (GeneSNP Utah)BSG
SNP : HGBaseBSG
Genetic variants : HAPMAPBSG
Exome VariantBSG
1000_GenomesBSG 
ICGC programENSG00000172270 
Somatic Mutations in Cancer : COSMICBSG 
CONAN: Copy Number AnalysisBSG 
Mutations and Diseases : HGMDBSG
Mutations and Diseases : intOGenBSG
Genomic VariantsBSG  BSG [DGVbeta]
dbVarBSG
ClinVarBSG
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM109480    111380   
MedgenBSG
GENETestsBSG
Disease Genetic AssociationBSG
Huge Navigator BSG [HugePedia]  BSG [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneBSG
Homology/Alignments : Family Browser (UCSC)BSG
Phylogenetic Trees/Animal Genes : TreeFamBSG
Chemical/Protein Interactions : CTD682
Chemical/Pharm GKB GenePA25433
Clinical trialBSG
Cancer Resource (Charite)ENSG00000172270
Other databases
Probes
Litterature
PubMed345 Pubmed reference(s) in Entrez
CoreMineBSG
iHOPBSG
OncoSearchBSG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:39:58 CEST 2014

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