Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BSN (bassoon presynaptic cytomatrix protein)

Identity

Alias_namesZNF231
bassoon (presynaptic cytomatrix protein)
Other alias
HGNC (Hugo) BSN
LocusID (NCBI) 8927
Atlas_Id 60816
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49554489 and ends at 49671549 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BSN (3p21.31) / ARL8B (3p26.1)BSN (3p21.31) / BSN (3p21.31)BSN (3p21.31) / HMP19 (5q35.2)
PTK2 (8q24.3) / BSN (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BSN   1117
Cards
Entrez_Gene (NCBI)BSN  8927  bassoon presynaptic cytomatrix protein
AliasesZNF231
GeneCards (Weizmann)BSN
Ensembl hg19 (Hinxton)ENSG00000164061 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164061 [Gene_View]  chr3:49554489-49671549 [Contig_View]  BSN [Vega]
ICGC DataPortalENSG00000164061
TCGA cBioPortalBSN
AceView (NCBI)BSN
Genatlas (Paris)BSN
WikiGenes8927
SOURCE (Princeton)BSN
Genetics Home Reference (NIH)BSN
Genomic and cartography
GoldenPath hg38 (UCSC)BSN  -     chr3:49554489-49671549 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BSN  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblBSN - 3p21.31 [CytoView hg19]  BSN - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIBSN [Mapview hg19]  BSN [Mapview hg38]
OMIM604020   
Gene and transcription
Genbank (Entrez)AB007894 AF052224 AW131629
RefSeq transcript (Entrez)NM_003458
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BSN
Cluster EST : UnigeneHs.194684 [ NCBI ]
CGAP (NCI)Hs.194684
Alternative Splicing GalleryENSG00000164061
Gene ExpressionBSN [ NCBI-GEO ]   BSN [ EBI - ARRAY_EXPRESS ]   BSN [ SEEK ]   BSN [ MEM ]
Gene Expression Viewer (FireBrowse)BSN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8927
GTEX Portal (Tissue expression)BSN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPA5
Splice isoforms : SwissVarQ9UPA5
PhosPhoSitePlusQ9UPA5
Domains : Interpro (EBI)Bsn    Znf_FYVE_PHD    Znf_piccolo    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-piccolo (PF05715)   
Domain families : Pfam (NCBI)pfam05715   
Conserved Domain (NCBI)BSN
DMDM Disease mutations8927
Blocks (Seattle)BSN
SuperfamilyQ9UPA5
Human Protein AtlasENSG00000164061
Peptide AtlasQ9UPA5
HPRD04933
IPIIPI00020153   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPA5
IntAct (EBI)Q9UPA5
FunCoupENSG00000164061
BioGRIDBSN
STRING (EMBL)BSN
ZODIACBSN
Ontologies - Pathways
QuickGOQ9UPA5
Ontology : AmiGOnucleus  chemical synaptic transmission  synapse assembly  cell surface  postsynaptic density  cell junction  axon  dendrite  protein localization to synapse  neuron projection terminus  metal ion binding  presynaptic active zone  cytoskeleton of presynaptic active zone  cytoskeleton of presynaptic active zone  excitatory synapse  presynapse to nucleus signaling pathway  
Ontology : EGO-EBInucleus  chemical synaptic transmission  synapse assembly  cell surface  postsynaptic density  cell junction  axon  dendrite  protein localization to synapse  neuron projection terminus  metal ion binding  presynaptic active zone  cytoskeleton of presynaptic active zone  cytoskeleton of presynaptic active zone  excitatory synapse  presynapse to nucleus signaling pathway  
NDEx NetworkBSN
Atlas of Cancer Signalling NetworkBSN
Wikipedia pathwaysBSN
Orthology - Evolution
OrthoDB8927
GeneTree (enSembl)ENSG00000164061
Phylogenetic Trees/Animal Genes : TreeFamBSN
HOVERGENQ9UPA5
HOGENOMQ9UPA5
Homologs : HomoloGeneBSN
Homology/Alignments : Family Browser (UCSC)BSN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBSN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BSN
dbVarBSN
ClinVarBSN
1000_GenomesBSN 
Exome Variant ServerBSN
ExAC (Exome Aggregation Consortium)BSN (select the gene name)
Genetic variants : HAPMAP8927
Genomic Variants (DGV)BSN [DGVbeta]
DECIPHERBSN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBSN 
Mutations
ICGC Data PortalBSN 
TCGA Data PortalBSN 
Broad Tumor PortalBSN
OASIS PortalBSN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBSN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBSN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BSN
DgiDB (Drug Gene Interaction Database)BSN
DoCM (Curated mutations)BSN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BSN (select a term)
intoGenBSN
Cancer3DBSN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604020   
Orphanet
MedgenBSN
Genetic Testing Registry BSN
NextProtQ9UPA5 [Medical]
TSGene8927
GENETestsBSN
Target ValidationBSN
Huge Navigator BSN [HugePedia]
snp3D : Map Gene to Disease8927
BioCentury BCIQBSN
ClinGenBSN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8927
Chemical/Pharm GKB GenePA25434
Clinical trialBSN
Miscellaneous
canSAR (ICR)BSN (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBSN
EVEXBSN
GoPubMedBSN
iHOPBSN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:39:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.