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BSPH1 (binder of sperm protein homolog 1)

Identity

Alias_symbol (synonym)ELSPBP2
BSP1
Other alias
HGNC (Hugo) BSPH1
LocusID (NCBI) 100131137
Atlas_Id 60819
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 47968046 and ends at 47992170 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BSPH1   33906
Cards
Entrez_Gene (NCBI)BSPH1  100131137  binder of sperm protein homolog 1
AliasesBSP1; ELSPBP2
GeneCards (Weizmann)BSPH1
Ensembl hg19 (Hinxton)ENSG00000188334 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188334 [Gene_View]  chr19:47968046-47992170 [Contig_View]  BSPH1 [Vega]
ICGC DataPortalENSG00000188334
TCGA cBioPortalBSPH1
AceView (NCBI)BSPH1
Genatlas (Paris)BSPH1
WikiGenes100131137
SOURCE (Princeton)BSPH1
Genetics Home Reference (NIH)BSPH1
Genomic and cartography
GoldenPath hg38 (UCSC)BSPH1  -     chr19:47968046-47992170 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BSPH1  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblBSPH1 - 19q13.33 [CytoView hg19]  BSPH1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIBSPH1 [Mapview hg19]  BSPH1 [Mapview hg38]
OMIM612213   
Gene and transcription
Genbank (Entrez)DQ227497
RefSeq transcript (Entrez)NM_001128326
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BSPH1
Cluster EST : UnigeneHs.651072 [ NCBI ]
CGAP (NCI)Hs.651072
Alternative Splicing GalleryENSG00000188334
Gene ExpressionBSPH1 [ NCBI-GEO ]   BSPH1 [ EBI - ARRAY_EXPRESS ]   BSPH1 [ SEEK ]   BSPH1 [ MEM ]
Gene Expression Viewer (FireBrowse)BSPH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131137
GTEX Portal (Tissue expression)BSPH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ075Z2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ075Z2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ075Z2
Splice isoforms : SwissVarQ075Z2
PhosPhoSitePlusQ075Z2
Domaine pattern : Prosite (Expaxy)FN2_1 (PS00023)    FN2_2 (PS51092)   
Domains : Interpro (EBI)FN_type2_col-bd    Kringle-like   
Domain families : Pfam (Sanger)fn2 (PF00040)   
Domain families : Pfam (NCBI)pfam00040   
Domain families : Smart (EMBL)FN2 (SM00059)  
Conserved Domain (NCBI)BSPH1
DMDM Disease mutations100131137
Blocks (Seattle)BSPH1
SuperfamilyQ075Z2
Human Protein AtlasENSG00000188334
Peptide AtlasQ075Z2
IPIIPI00411797   
Protein Interaction databases
DIP (DOE-UCLA)Q075Z2
IntAct (EBI)Q075Z2
FunCoupENSG00000188334
BioGRIDBSPH1
STRING (EMBL)BSPH1
ZODIACBSPH1
Ontologies - Pathways
QuickGOQ075Z2
Ontology : AmiGOextracellular region  single fertilization  heparin binding  cell surface  sperm capacitation  
Ontology : EGO-EBIextracellular region  single fertilization  heparin binding  cell surface  sperm capacitation  
NDEx NetworkBSPH1
Atlas of Cancer Signalling NetworkBSPH1
Wikipedia pathwaysBSPH1
Orthology - Evolution
OrthoDB100131137
GeneTree (enSembl)ENSG00000188334
Phylogenetic Trees/Animal Genes : TreeFamBSPH1
HOVERGENQ075Z2
HOGENOMQ075Z2
Homologs : HomoloGeneBSPH1
Homology/Alignments : Family Browser (UCSC)BSPH1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBSPH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BSPH1
dbVarBSPH1
ClinVarBSPH1
1000_GenomesBSPH1 
Exome Variant ServerBSPH1
ExAC (Exome Aggregation Consortium)BSPH1 (select the gene name)
Genetic variants : HAPMAP100131137
Genomic Variants (DGV)BSPH1 [DGVbeta]
DECIPHERBSPH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBSPH1 
Mutations
ICGC Data PortalBSPH1 
TCGA Data PortalBSPH1 
Broad Tumor PortalBSPH1
OASIS PortalBSPH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBSPH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBSPH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BSPH1
DgiDB (Drug Gene Interaction Database)BSPH1
DoCM (Curated mutations)BSPH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BSPH1 (select a term)
intoGenBSPH1
Cancer3DBSPH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612213   
Orphanet
MedgenBSPH1
Genetic Testing Registry BSPH1
NextProtQ075Z2 [Medical]
TSGene100131137
GENETestsBSPH1
Target ValidationBSPH1
Huge Navigator BSPH1 [HugePedia]
snp3D : Map Gene to Disease100131137
BioCentury BCIQBSPH1
ClinGenBSPH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131137
Chemical/Pharm GKB GenePA164716709
Clinical trialBSPH1
Miscellaneous
canSAR (ICR)BSPH1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBSPH1
EVEXBSPH1
GoPubMedBSPH1
iHOPBSPH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:29 CEST 2017

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