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BSPRY (B-box and SPRY domain containing)

Identity

Other alias-
HGNC (Hugo) BSPRY
LocusID (NCBI) 54836
Atlas_Id 57027
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 113349532 and ends at 113371233 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BSPRY (9q32) / NPM1 (5q35.1)DIDO1 (20q13.33) / BSPRY (9q32)RGS3 (9q32) / BSPRY (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BSPRY   18232
Cards
Entrez_Gene (NCBI)BSPRY  54836  B-box and SPRY domain containing
Aliases
GeneCards (Weizmann)BSPRY
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:113349532-113371233 [Contig_View]  BSPRY [Vega]
TCGA cBioPortalBSPRY
AceView (NCBI)BSPRY
Genatlas (Paris)BSPRY
WikiGenes54836
SOURCE (Princeton)BSPRY
Genetics Home Reference (NIH)BSPRY
Genomic and cartography
GoldenPath hg38 (UCSC)BSPRY  -     chr9:113349532-113371233 +  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BSPRY  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblBSPRY - 9q32 [CytoView hg19]  BSPRY - 9q32 [CytoView hg38]
Mapping of homologs : NCBIBSPRY [Mapview hg19]  BSPRY [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ276691 AK000157 AK092607 BC001477 BP370567
RefSeq transcript (Entrez)NM_001317943 NM_001317944 NM_017688
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BSPRY
Cluster EST : UnigeneHs.614517 [ NCBI ]
CGAP (NCI)Hs.614517
Gene ExpressionBSPRY [ NCBI-GEO ]   BSPRY [ EBI - ARRAY_EXPRESS ]   BSPRY [ SEEK ]   BSPRY [ MEM ]
Gene Expression Viewer (FireBrowse)BSPRY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54836
GTEX Portal (Tissue expression)BSPRY
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W0U4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W0U4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W0U4
Splice isoforms : SwissVarQ5W0U4
PhosPhoSitePlusQ5W0U4
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)BSPRY
DMDM Disease mutations54836
Blocks (Seattle)BSPRY
SuperfamilyQ5W0U4
Peptide AtlasQ5W0U4
IPIIPI00301791   IPI00185568   
Protein Interaction databases
DIP (DOE-UCLA)Q5W0U4
IntAct (EBI)Q5W0U4
BioGRIDBSPRY
STRING (EMBL)BSPRY
ZODIACBSPRY
Ontologies - Pathways
QuickGOQ5W0U4
Ontology : AmiGOcalcium ion transport  membrane  cell leading edge  metal ion binding  perinuclear region of cytoplasm  cellular response to leukemia inhibitory factor  
Ontology : EGO-EBIcalcium ion transport  membrane  cell leading edge  metal ion binding  perinuclear region of cytoplasm  cellular response to leukemia inhibitory factor  
NDEx NetworkBSPRY
Atlas of Cancer Signalling NetworkBSPRY
Wikipedia pathwaysBSPRY
Orthology - Evolution
OrthoDB54836
Phylogenetic Trees/Animal Genes : TreeFamBSPRY
HOVERGENQ5W0U4
HOGENOMQ5W0U4
Homologs : HomoloGeneBSPRY
Homology/Alignments : Family Browser (UCSC)BSPRY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBSPRY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BSPRY
dbVarBSPRY
ClinVarBSPRY
1000_GenomesBSPRY 
Exome Variant ServerBSPRY
ExAC (Exome Aggregation Consortium)BSPRY (select the gene name)
Genetic variants : HAPMAP54836
Genomic Variants (DGV)BSPRY [DGVbeta]
DECIPHERBSPRY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBSPRY 
Mutations
ICGC Data PortalBSPRY 
TCGA Data PortalBSPRY 
Broad Tumor PortalBSPRY
OASIS PortalBSPRY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBSPRY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBSPRY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BSPRY
DgiDB (Drug Gene Interaction Database)BSPRY
DoCM (Curated mutations)BSPRY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BSPRY (select a term)
intoGenBSPRY
Cancer3DBSPRY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBSPRY
Genetic Testing Registry BSPRY
NextProtQ5W0U4 [Medical]
TSGene54836
GENETestsBSPRY
Target ValidationBSPRY
Huge Navigator BSPRY [HugePedia]
snp3D : Map Gene to Disease54836
BioCentury BCIQBSPRY
ClinGenBSPRY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54836
Chemical/Pharm GKB GenePA134979106
Clinical trialBSPRY
Miscellaneous
canSAR (ICR)BSPRY (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBSPRY
EVEXBSPRY
GoPubMedBSPRY
iHOPBSPRY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:59:36 CEST 2017

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