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BSX (brain-specific homeobox)

Identity

Alias_symbol (synonym)BSX1
Other alias
HGNC (Hugo) BSX
LocusID (NCBI) 390259
Atlas_Id 60821
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 122848357 and ends at 122852379 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BSX   20450
Cards
Entrez_Gene (NCBI)BSX  390259  brain-specific homeobox
AliasesBSX1
GeneCards (Weizmann)BSX
Ensembl hg19 (Hinxton)ENSG00000188909 [Gene_View]  chr11:122848357-122852379 [Contig_View]  BSX [Vega]
Ensembl hg38 (Hinxton)ENSG00000188909 [Gene_View]  chr11:122848357-122852379 [Contig_View]  BSX [Vega]
ICGC DataPortalENSG00000188909
TCGA cBioPortalBSX
AceView (NCBI)BSX
Genatlas (Paris)BSX
WikiGenes390259
SOURCE (Princeton)BSX
Genetics Home Reference (NIH)BSX
Genomic and cartography
GoldenPath hg19 (UCSC)BSX  -     chr11:122848357-122852379 -  11q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BSX  -     11q24.1   [Description]    (hg38-Dec_2013)
EnsemblBSX - 11q24.1 [CytoView hg19]  BSX - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBIBSX [Mapview hg19]  BSX [Mapview hg38]
OMIM611074   
Gene and transcription
Genbank (Entrez)AB231738
RefSeq transcript (Entrez)NM_001098169
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)BSX
Cluster EST : UnigeneHs.449687 [ NCBI ]
CGAP (NCI)Hs.449687
Alternative Splicing GalleryENSG00000188909
Gene ExpressionBSX [ NCBI-GEO ]   BSX [ EBI - ARRAY_EXPRESS ]   BSX [ SEEK ]   BSX [ MEM ]
Gene Expression Viewer (FireBrowse)BSX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390259
GTEX Portal (Tissue expression)BSX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3C1V8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3C1V8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3C1V8
Splice isoforms : SwissVarQ3C1V8
PhosPhoSitePlusQ3C1V8
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)BSX
DMDM Disease mutations390259
Blocks (Seattle)BSX
SuperfamilyQ3C1V8
Human Protein AtlasENSG00000188909
Peptide AtlasQ3C1V8
IPIIPI00847613   
Protein Interaction databases
DIP (DOE-UCLA)Q3C1V8
IntAct (EBI)Q3C1V8
FunCoupENSG00000188909
BioGRIDBSX
STRING (EMBL)BSX
ZODIACBSX
Ontologies - Pathways
QuickGOQ3C1V8
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  nucleus  transcription factor complex  cytoplasm  transcription, DNA-templated  locomotory behavior  eating behavior  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  mammary gland involution  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  nucleus  transcription factor complex  cytoplasm  transcription, DNA-templated  locomotory behavior  eating behavior  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  mammary gland involution  
NDEx NetworkBSX
Atlas of Cancer Signalling NetworkBSX
Wikipedia pathwaysBSX
Orthology - Evolution
OrthoDB390259
GeneTree (enSembl)ENSG00000188909
Phylogenetic Trees/Animal Genes : TreeFamBSX
HOVERGENQ3C1V8
HOGENOMQ3C1V8
Homologs : HomoloGeneBSX
Homology/Alignments : Family Browser (UCSC)BSX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBSX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BSX
dbVarBSX
ClinVarBSX
1000_GenomesBSX 
Exome Variant ServerBSX
ExAC (Exome Aggregation Consortium)BSX (select the gene name)
Genetic variants : HAPMAP390259
Genomic Variants (DGV)BSX [DGVbeta]
DECIPHER (Syndromes)11:122848357-122852379  ENSG00000188909
CONAN: Copy Number AnalysisBSX 
Mutations
ICGC Data PortalBSX 
TCGA Data PortalBSX 
Broad Tumor PortalBSX
OASIS PortalBSX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBSX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBSX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BSX
DgiDB (Drug Gene Interaction Database)BSX
DoCM (Curated mutations)BSX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BSX (select a term)
intoGenBSX
Cancer3DBSX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611074   
Orphanet
MedgenBSX
Genetic Testing Registry BSX
NextProtQ3C1V8 [Medical]
TSGene390259
GENETestsBSX
Huge Navigator BSX [HugePedia]
snp3D : Map Gene to Disease390259
BioCentury BCIQBSX
ClinGenBSX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390259
Chemical/Pharm GKB GenePA162377618
Clinical trialBSX
Miscellaneous
canSAR (ICR)BSX (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBSX
EVEXBSX
GoPubMedBSX
iHOPBSX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:05 CET 2017

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