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BTAF1 (BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa)

Identity

Other namesMOT1
TAF(II)170
TAF172
TAFII170
HGNC (Hugo) BTAF1
LocusID (NCBI) 9044
Location 10q23.32
Location_base_pair Starts at 93683736 and ends at 93790080 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BTAF1   17307
Cards
Entrez_Gene (NCBI)BTAF1  9044  BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
GeneCards (Weizmann)BTAF1
Ensembl (Hinxton)ENSG00000095564 [Gene_View]  chr10:93683736-93790080 [Contig_View]  BTAF1 [Vega]
ICGC DataPortalENSG00000095564
AceView (NCBI)BTAF1
Genatlas (Paris)BTAF1
WikiGenes9044
SOURCE (Princeton)NM_003972
Genomic and cartography
GoldenPath (UCSC)BTAF1  -  10q23.32   chr10:93683736-93790080 +  10q23.32   [Description]    (hg19-Feb_2009)
EnsemblBTAF1 - 10q23.32 [CytoView]
Mapping of homologs : NCBIBTAF1 [Mapview]
OMIM605191   
Gene and transcription
Genbank (Entrez)AB208843 AF038362 AJ001017 AK303554 AK308399
RefSeq transcript (Entrez)NM_003972
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838005 NW_004929376
Consensus coding sequences : CCDS (NCBI)BTAF1
Cluster EST : UnigeneHs.500526 [ NCBI ]
CGAP (NCI)Hs.500526
Alternative Splicing : Fast-db (Paris)GSHG0003560
Alternative Splicing GalleryENSG00000095564
Gene ExpressionBTAF1 [ NCBI-GEO ]     BTAF1 [ SEEK ]   BTAF1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14981 (Uniprot)
NextProtO14981  [Medical]
With graphics : InterProO14981
Splice isoforms : SwissVarO14981 (Swissvar)
Catalytic activity : Enzyme3.6.4.- [ Enzyme-Expasy ]   3.6.4.-3.6.4.- [ IntEnz-EBI ]   3.6.4.- [ BRENDA ]   3.6.4.- [ KEGG ]   
Domaine pattern : Prosite (Expaxy)HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    DUF3535    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    SNF2_N   
Related proteins : CluSTrO14981
Domain families : Pfam (Sanger)DUF3535 (PF12054)    Helicase_C (PF00271)    SNF2_N (PF00176)   
Domain families : Pfam (NCBI)pfam12054    pfam00271    pfam00176   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
DMDM Disease mutations9044
Blocks (Seattle)O14981
Human Protein AtlasENSG00000095564
Peptide AtlasO14981
HPRD05546
IPIIPI00024802   IPI01015564   IPI01013393   
Protein Interaction databases
DIP (DOE-UCLA)O14981
IntAct (EBI)O14981
FunCoupENSG00000095564
BioGRIDBTAF1
InParanoidO14981
Interologous Interaction database O14981
IntegromeDBBTAF1
STRING (EMBL)BTAF1
Ontologies - Pathways
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  helicase activity  ATP binding  nucleus  metabolic process  negative regulation of chromatin binding  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  helicase activity  ATP binding  nucleus  metabolic process  negative regulation of chromatin binding  negative regulation of transcription, DNA-templated  
Protein Interaction DatabaseBTAF1
Wikipedia pathwaysBTAF1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BTAF1
SNP (GeneSNP Utah)BTAF1
SNP : HGBaseBTAF1
Genetic variants : HAPMAPBTAF1
1000_GenomesBTAF1 
ICGC programENSG00000095564 
CONAN: Copy Number AnalysisBTAF1 
Somatic Mutations in Cancer : COSMICBTAF1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDBTAF1
OMIM605191   
MedgenBTAF1
GENETestsBTAF1
Disease Genetic AssociationBTAF1
Huge Navigator BTAF1 [HugePedia]  BTAF1 [HugeCancerGEM]
Genomic VariantsBTAF1  BTAF1 [DGVbeta]
Exome VariantBTAF1
dbVarBTAF1
ClinVarBTAF1
snp3D : Map Gene to Disease9044
General knowledge
Homologs : HomoloGeneBTAF1
Homology/Alignments : Family Browser (UCSC)BTAF1
Phylogenetic Trees/Animal Genes : TreeFamBTAF1
Chemical/Protein Interactions : CTD9044
Chemical/Pharm GKB GenePA25437
Clinical trialBTAF1
Cancer Resource (Charite)ENSG00000095564
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
CoreMineBTAF1
iHOPBTAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:35:10 CEST 2014

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