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BTAF1 (BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae))

Identity

Other namesKIAA0940
MGC138406
MOT1
TAF(II)170
TAF172
TAFII170
HGNC (Hugo) BTAF1
Location 10q23.32
Location_base_pair Starts at 93673716 and ends at 93780060 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BTAF1   17307
Entrez_Gene (NCBI)BTAF1  9044  BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)
Cards
GeneCards (Weizmann)BTAF1
Ensembl (Hinxton)ENSG00000095564 [Gene_View]  BTAF1 [Vega]
AceView (NCBI)BTAF1
Genatlas (Paris)BTAF1
euGene (Indiana)9044
SOURCE (Stanford)NM_003972
Gene Expression (Array Express) ENSG00000095564
Genomic and cartography
GoldenPath (UCSC)BTAF1  -  10q23.32   chr10:93673716-93780060 +  10q23.32   [Description]    (hg18-March_2006)
EnsemblBTAF1 - 10q23.32 [CytoView]
Mapping of homologs : NCBIBTAF1 [Mapview]
OMIM605191   
Gene and transcription
Gene : Genbank (Entrez)AB208843 AF038362 AJ001017 AK303554 AK308399
Reference sequence (RefSeq transcript) :SRSNM_003972
Reference transcript : EntrezNM_003972
RefSeq genomic : SRSAC_000053 AC_000142 NC_000010 NT_030059 NW_001838005 NW_924884
RefSeq genomic : EntrezAC_000053 AC_000142 NC_000010 NT_030059 NW_001838005 NW_924884
Consensus coding sequences : CCDS NCBIBTAF1
Cluster EST : UnigeneHs.500526 [ SRS ] Hs.500526 [ NCBI ]
Alternative Splicing : Fast-db (Paris)15558
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtO14981 (SRS) O14981 (Expasy) O14981 (Uniprot)
With graphics : InterProO14981
Splice isoforms : VarSplice FASTAO14981(VarSplice FASTA)
Domaine pattern : Prosite (SRS)HEAT_REPEAT (PS50077)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domain pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (SRS)ARM-like    ARM-type_fold    DEAD-like_N    DNA/RNA_helicase_C    HEAT    Helicase_SF1/SF2_ATP-bd    SNF2_N   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    DEAD-like_N    DNA/RNA_helicase_C    HEAT    Helicase_SF1/SF2_ATP-bd    SNF2_N   
Related proteins : CluSTrO14981
Domain families : Pfam SRSHEAT (PF02985)    Helicase_C (PF00271)    SNF2_N (PF00176)   
Domain families : Pfam SangerHEAT (PF02985)    Helicase_C (PF00271)    SNF2_N (PF00176)   
Domain families : Pfam NCBIpfam02985    pfam00271    pfam00176   
Domain families : Smart EMBLDEXDc (SM00487)  HELICc (SM00490)  
Blocks (Seattle)O14981
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD05546
Protein Interaction databases
DIP (DOE-UCLA)O14981
IntAct (EBI)O14981
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIBTAF1
SNP : GeneSNP UtahBTAF1
SNP : HGBaseBTAF1
Genetic variants : HAPMAPBTAF1
Somatic Mutations in Cancer : COSMICBTAF1 
Mutations and Diseases : HGMDBTAF1
Hereditary diseases : OMIM605191   
Hereditary diseases : GENETests605191   
Diseases : Genetic AssociationBTAF1
General knowledge
Homologs : HomoloGeneBTAF1
Homology/Alignments : Family Browser UCSCBTAF1
Phylogenetic Trees/Animal Genes : TreeFamBTAF1
Catalytic activity : Enzyme3.6.1.- [ Enzyme-Expasy ]   3.6.1.- [ Enzyme-SRS ]   3.6.1.- [ IntEnz-EBI ]   3.6.1.- [ BRENDA ]   3.6.1.- [ KEGG ]   
Chemical/Protein Interactions : CTD9044
Keywords Ontology : AmiGOnucleotide binding  transcription factor activity  helicase activity  ATP binding  nucleus  negative regulation of transcription  hydrolase activity  
Keywords Ontology : EGO-EBInucleotide binding  transcription factor activity  helicase activity  ATP binding  nucleus  negative regulation of transcription  hydrolase activity  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesBTAF1 Related clones (RZPD - Berlin)
Literature
PubMed21 Pubmed reference(s) in Entrez
PubGeneBTAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:41:53 CET 2010
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