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BTAF1 (B-TFIID TATA-box binding protein associated factor 1)

Identity

Other namesMOT1
TAF(II)170
TAF172
TAFII170
HGNC (Hugo) BTAF1
LocusID (NCBI) 9044
Atlas_Id 846
Location 10q23.32
Location_base_pair Starts at 93683736 and ends at 93790080 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CALM2 (2p21) / BTAF1 (10q23.32)CFAP45 (1q23.2) / BTAF1 (10q23.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTAF1   17307
Cards
Entrez_Gene (NCBI)BTAF1  9044  B-TFIID TATA-box binding protein associated factor 1
AliasesMOT1; TAF(II)170; TAF172; TAFII170
GeneCards (Weizmann)BTAF1
Ensembl hg19 (Hinxton)ENSG00000095564 [Gene_View]  chr10:93683736-93790080 [Contig_View]  BTAF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000095564 [Gene_View]  chr10:93683736-93790080 [Contig_View]  BTAF1 [Vega]
ICGC DataPortalENSG00000095564
TCGA cBioPortalBTAF1
AceView (NCBI)BTAF1
Genatlas (Paris)BTAF1
WikiGenes9044
SOURCE (Princeton)BTAF1
Genomic and cartography
GoldenPath hg19 (UCSC)BTAF1  -     chr10:93683736-93790080 +  10q23.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BTAF1  -     10q23.32   [Description]    (hg38-Dec_2013)
EnsemblBTAF1 - 10q23.32 [CytoView hg19]  BTAF1 - 10q23.32 [CytoView hg38]
Mapping of homologs : NCBIBTAF1 [Mapview hg19]  BTAF1 [Mapview hg38]
OMIM605191   
Gene and transcription
Genbank (Entrez)AB208843 AF038362 AJ001017 AK303554 AK308399
RefSeq transcript (Entrez)NM_003972
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)BTAF1
Cluster EST : UnigeneHs.500526 [ NCBI ]
CGAP (NCI)Hs.500526
Alternative Splicing GalleryENSG00000095564
Gene ExpressionBTAF1 [ NCBI-GEO ]   BTAF1 [ EBI - ARRAY_EXPRESS ]   BTAF1 [ SEEK ]   BTAF1 [ MEM ]
Gene Expression Viewer (FireBrowse)BTAF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9044
GTEX Portal (Tissue expression)BTAF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14981 (Uniprot)
NextProtO14981  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14981
Splice isoforms : SwissVarO14981 (Swissvar)
Catalytic activity : Enzyme3.6.4.- [ Enzyme-Expasy ]   3.6.4.-3.6.4.- [ IntEnz-EBI ]   3.6.4.- [ BRENDA ]   3.6.4.- [ KEGG ]   
PhosPhoSitePlusO14981
Domaine pattern : Prosite (Expaxy)HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    DUF3535    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    SNF2_N   
Domain families : Pfam (Sanger)DUF3535 (PF12054)    Helicase_C (PF00271)    SNF2_N (PF00176)   
Domain families : Pfam (NCBI)pfam12054    pfam00271    pfam00176   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
DMDM Disease mutations9044
Blocks (Seattle)BTAF1
SuperfamilyO14981
Human Protein AtlasENSG00000095564
Peptide AtlasO14981
HPRD05546
IPIIPI00024802   IPI01015564   IPI01013393   
Protein Interaction databases
DIP (DOE-UCLA)O14981
IntAct (EBI)O14981
FunCoupENSG00000095564
BioGRIDBTAF1
STRING (EMBL)BTAF1
ZODIACBTAF1
Ontologies - Pathways
QuickGOO14981
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  helicase activity  ATP binding  nucleoplasm  metabolic process  negative regulation of chromatin binding  intracellular membrane-bounded organelle  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  helicase activity  ATP binding  nucleoplasm  metabolic process  negative regulation of chromatin binding  intracellular membrane-bounded organelle  negative regulation of transcription, DNA-templated  
NDEx Network
Atlas of Cancer Signalling NetworkBTAF1
Wikipedia pathwaysBTAF1
Orthology - Evolution
OrthoDB9044
GeneTree (enSembl)ENSG00000095564
Phylogenetic Trees/Animal Genes : TreeFamBTAF1
Homologs : HomoloGeneBTAF1
Homology/Alignments : Family Browser (UCSC)BTAF1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerBTAF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTAF1
dbVarBTAF1
ClinVarBTAF1
1000_GenomesBTAF1 
Exome Variant ServerBTAF1
ExAC (Exome Aggregation Consortium)BTAF1 (select the gene name)
Genetic variants : HAPMAP9044
Genomic Variants (DGV)BTAF1 [DGVbeta]
Mutations
ICGC Data PortalBTAF1 
TCGA Data PortalBTAF1 
Broad Tumor PortalBTAF1
OASIS PortalBTAF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTAF1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTAF1
DgiDB (Drug Gene Interaction Database)BTAF1
DoCM (Curated mutations)BTAF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTAF1 (select a term)
intoGenBTAF1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)10:93683736-93790080  ENSG00000095564
CONAN: Copy Number AnalysisBTAF1 
Mutations and Diseases : HGMDBTAF1
OMIM605191   
MedgenBTAF1
Genetic Testing Registry BTAF1
NextProtO14981 [Medical]
TSGene9044
GENETestsBTAF1
Huge Navigator BTAF1 [HugePedia]
snp3D : Map Gene to Disease9044
BioCentury BCIQBTAF1
ClinGenBTAF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9044
Chemical/Pharm GKB GenePA25437
Clinical trialBTAF1
Miscellaneous
canSAR (ICR)BTAF1 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTAF1
EVEXBTAF1
GoPubMedBTAF1
iHOPBTAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 10:55:41 CEST 2016

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