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BTAF1 (BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae))

Identity

Other namesMOT1
TAF(II)170
TAF172
TAFII170
HGNC (Hugo) BTAF1
LocusID (NCBI) 9044
Location 10q23.32
Location_base_pair Starts at 93683736 and ends at 93790080 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BTAF1   17307
Entrez_Gene (NCBI)BTAF1  9044  BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)
Cards
GeneCards (Weizmann)BTAF1
Ensembl (Hinxton)ENSG00000095564 [Gene_View]  chr10:93683736-93790080 [Contig_View]  BTAF1 [Vega]
AceView (NCBI)BTAF1
Genatlas (Paris)BTAF1
SOURCE (Stanford)NM_003972
Genomic and cartography
GoldenPath (UCSC)BTAF1  -  10q23.32   chr10:93683736-93790080 +  10q23.32   [Description]    (hg19-Feb_2009)
EnsemblBTAF1 - 10q23.32 [CytoView]
Mapping of homologs : NCBIBTAF1 [Mapview]
OMIM605191   
Gene and transcription
Genbank (Entrez)AB208843 AF038362 AJ001017 AK303554 AK308399
RefSeq transcript (SRS)NM_003972
RefSeq transcript (Entrez)NM_003972
RefSeq genomic (SRS)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838005 NW_004078068
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838005 NW_004078068
Consensus coding sequences : CCDS (NCBI)BTAF1
Cluster EST : UnigeneHs.500526 [ SRS ] Hs.500526 [ NCBI ]
CGAP (NCI)Hs.500526
Alternative Splicing : Fast-db (Paris)GSHG0003560
Alternative Splicing GalleryENSG00000095564
Gene ExpressionBTAF1 [ NCBI-GEO ]   BTAF1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14981 (SRS) O14981 (Uniprot)
NextProtO14981
With graphics : InterProO14981
Splice isoforms : SwissVarO14981(Swissvar)
Domaine pattern : Prosite (SRS)HEAT_REPEAT (PS50077)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (SRS)ARM-like    ARM-type_fold    DUF3535    Helicase_ATP-bd    Helicase_C    SNF2_N   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    DUF3535    Helicase_ATP-bd    Helicase_C    SNF2_N   
Related proteins : CluSTrO14981
Domain families : Pfam (SRS)DUF3535 (PF12054)    Helicase_C (PF00271)    SNF2_N (PF00176)   
Domain families : Pfam (Sanger)DUF3535 (PF12054)    Helicase_C (PF00271)    SNF2_N (PF00176)   
Domain families : Pfam (NCBI)pfam12054    pfam00271    pfam00176   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
DMDM9044
Blocks (Seattle)O14981
Human Protein AtlasENSG00000095564
HPRD05546
IPIIPI00024802   IPI01015564   IPI01013393   
Protein Interaction databases
DIP (DOE-UCLA)O14981
IntAct (EBI)O14981
FunCoupENSG00000095564
REACTOMEBTAF1
Protein Interaction Database9044
BioGRIDBTAF1
InParanoidO14981
Interologous Interaction database O14981
IntegromeDBBTAF1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BTAF1
SNP (GeneSNP Utah)BTAF1
SNP : HGBaseBTAF1
Genetic variants : HAPMAPBTAF1
Somatic Mutations in Cancer : COSMICBTAF1 
CONAN: Copy Number AnalysisBTAF1 
Mutations and Diseases : HGMDBTAF1
OMIM605191   
GENETests605191   
Disease Genetic AssociationBTAF1
Huge Navigator BTAF1 [HugePedia]  BTAF1 [HugeCancerGEM]
Genomic VariantsBTAF1  BTAF1 [DGVbeta]
snp3D : Map Gene to Disease9044
General knowledge
Homologs : HomoloGeneBTAF1
Homology/Alignments : Family Browser (UCSC)BTAF1
Phylogenetic Trees/Animal Genes : TreeFamBTAF1
Catalytic activity : Enzyme3.6.4.- [ Enzyme-Expasy ]   3.6.4.- [ Enzyme-SRS ]   3.6.4.- [ IntEnz-EBI ]   3.6.4.- [ BRENDA ]   3.6.4.- [ KEGG ]   
Chemical/Protein Interactions : CTD9044
Chemical/Pharm GKB GenePA25437
Clinical trialBTAF1
Cancer Resource (Charite)ENSG00000095564
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  helicase activity  ATP binding  nucleus  negative regulation of transcription, DNA-dependent  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  helicase activity  ATP binding  nucleus  negative regulation of transcription, DNA-dependent  
Other databases
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
PubGeneBTAF1
iHOPBTAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:42:53 CEST 2013
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