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BTBD10 (BTB domain containing 10)

Identity

Alias_namesBTB (POZ) domain containing 10
Alias_symbol (synonym)GMRP1
GMRP-1
MGC13007
Other alias
HGNC (Hugo) BTBD10
LocusID (NCBI) 84280
Atlas_Id 55975
Location 11p15.3  [Link to chromosome band 11p15]
Location_base_pair Starts at 13387996 and ends at 13463297 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BTBD10 (11p15.2) / IPO5 (13q32.2)LLPH (12q14.3) / BTBD10 (11p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTBD10   21445
Cards
Entrez_Gene (NCBI)BTBD10  84280  BTB domain containing 10
AliasesGMRP-1; GMRP1
GeneCards (Weizmann)BTBD10
Ensembl hg19 (Hinxton)ENSG00000148925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148925 [Gene_View]  chr11:13387996-13463297 [Contig_View]  BTBD10 [Vega]
ICGC DataPortalENSG00000148925
TCGA cBioPortalBTBD10
AceView (NCBI)BTBD10
Genatlas (Paris)BTBD10
WikiGenes84280
SOURCE (Princeton)BTBD10
Genetics Home Reference (NIH)BTBD10
Genomic and cartography
GoldenPath hg38 (UCSC)BTBD10  -     chr11:13387996-13463297 -  11p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTBD10  -     11p15.3   [Description]    (hg19-Feb_2009)
EnsemblBTBD10 - 11p15.3 [CytoView hg19]  BTBD10 - 11p15.3 [CytoView hg38]
Mapping of homologs : NCBIBTBD10 [Mapview hg19]  BTBD10 [Mapview hg38]
OMIM615933   
Gene and transcription
Genbank (Entrez)AF329102 AI051522 AK095946 AK292392 AK294259
RefSeq transcript (Entrez)NM_001297741 NM_001297742 NM_032320
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTBD10
Cluster EST : UnigeneHs.332382 [ NCBI ]
CGAP (NCI)Hs.332382
Alternative Splicing GalleryENSG00000148925
Gene ExpressionBTBD10 [ NCBI-GEO ]   BTBD10 [ EBI - ARRAY_EXPRESS ]   BTBD10 [ SEEK ]   BTBD10 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84280
GTEX Portal (Tissue expression)BTBD10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSF8
Splice isoforms : SwissVarQ9BSF8
PhosPhoSitePlusQ9BSF8
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)BTBD10
DMDM Disease mutations84280
Blocks (Seattle)BTBD10
SuperfamilyQ9BSF8
Human Protein AtlasENSG00000148925
Peptide AtlasQ9BSF8
HPRD17045
IPIIPI00329070   IPI00976663   IPI00922046   IPI00983563   IPI00984727   IPI00984195   IPI00977830   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSF8
IntAct (EBI)Q9BSF8
FunCoupENSG00000148925
BioGRIDBTBD10
STRING (EMBL)BTBD10
ZODIACBTBD10
Ontologies - Pathways
QuickGOQ9BSF8
Ontology : AmiGOfibrillar center  nucleus  cytoplasm  positive regulation of phosphorylation  type B pancreatic cell proliferation  negative regulation of neuron death  
Ontology : EGO-EBIfibrillar center  nucleus  cytoplasm  positive regulation of phosphorylation  type B pancreatic cell proliferation  negative regulation of neuron death  
NDEx NetworkBTBD10
Atlas of Cancer Signalling NetworkBTBD10
Wikipedia pathwaysBTBD10
Orthology - Evolution
OrthoDB84280
GeneTree (enSembl)ENSG00000148925
Phylogenetic Trees/Animal Genes : TreeFamBTBD10
HOVERGENQ9BSF8
HOGENOMQ9BSF8
Homologs : HomoloGeneBTBD10
Homology/Alignments : Family Browser (UCSC)BTBD10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD10
dbVarBTBD10
ClinVarBTBD10
1000_GenomesBTBD10 
Exome Variant ServerBTBD10
ExAC (Exome Aggregation Consortium)BTBD10 (select the gene name)
Genetic variants : HAPMAP84280
Genomic Variants (DGV)BTBD10 [DGVbeta]
DECIPHERBTBD10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTBD10 
Mutations
ICGC Data PortalBTBD10 
TCGA Data PortalBTBD10 
Broad Tumor PortalBTBD10
OASIS PortalBTBD10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTBD10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTBD10
DgiDB (Drug Gene Interaction Database)BTBD10
DoCM (Curated mutations)BTBD10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTBD10 (select a term)
intoGenBTBD10
Cancer3DBTBD10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615933   
Orphanet
MedgenBTBD10
Genetic Testing Registry BTBD10
NextProtQ9BSF8 [Medical]
TSGene84280
GENETestsBTBD10
Target ValidationBTBD10
Huge Navigator BTBD10 [HugePedia]
snp3D : Map Gene to Disease84280
BioCentury BCIQBTBD10
ClinGenBTBD10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84280
Chemical/Pharm GKB GenePA142672543
Clinical trialBTBD10
Miscellaneous
canSAR (ICR)BTBD10 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTBD10
EVEXBTBD10
GoPubMedBTBD10
iHOPBTBD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:48:11 CEST 2017

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