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BTBD11 (BTB domain containing 11)

Identity

Alias_namesBTB (POZ) domain containing 11
Alias_symbol (synonym)FLJ33957
ABTB2B
Other alias
HGNC (Hugo) BTBD11
LocusID (NCBI) 121551
Atlas_Id 60824
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 107580857 and ends at 107659642 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BTBD11 (12q23.3) / HDLBP (2q37.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTBD11   23844
Cards
Entrez_Gene (NCBI)BTBD11  121551  BTB domain containing 11
AliasesABTB2B
GeneCards (Weizmann)BTBD11
Ensembl hg19 (Hinxton)ENSG00000151136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151136 [Gene_View]  chr12:107580857-107659642 [Contig_View]  BTBD11 [Vega]
ICGC DataPortalENSG00000151136
TCGA cBioPortalBTBD11
AceView (NCBI)BTBD11
Genatlas (Paris)BTBD11
WikiGenes121551
SOURCE (Princeton)BTBD11
Genetics Home Reference (NIH)BTBD11
Genomic and cartography
GoldenPath hg38 (UCSC)BTBD11  -     chr12:107580857-107659642 +  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTBD11  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblBTBD11 - 12q23.3 [CytoView hg19]  BTBD11 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIBTBD11 [Mapview hg19]  BTBD11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI638039 AK091276 AK094304 AK122818 AK124835
RefSeq transcript (Entrez)NM_001017523 NM_001018072 NM_001347943 NM_001347944 NM_152322
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTBD11
Cluster EST : UnigeneHs.271272 [ NCBI ]
CGAP (NCI)Hs.271272
Alternative Splicing GalleryENSG00000151136
Gene ExpressionBTBD11 [ NCBI-GEO ]   BTBD11 [ EBI - ARRAY_EXPRESS ]   BTBD11 [ SEEK ]   BTBD11 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121551
GTEX Portal (Tissue expression)BTBD11
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6QL63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6QL63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6QL63
Splice isoforms : SwissVarA6QL63
PhosPhoSitePlusA6QL63
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    BTB (PS50097)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    BTB/POZ_dom    Histone-fold    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)    BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00023    pfam12796    pfam00651   
Domain families : Smart (EMBL)ANK (SM00248)  BTB (SM00225)  
Conserved Domain (NCBI)BTBD11
DMDM Disease mutations121551
Blocks (Seattle)BTBD11
SuperfamilyA6QL63
Human Protein AtlasENSG00000151136
Peptide AtlasA6QL63
HPRD12536
IPIIPI00878014   IPI00604727   IPI00889522   IPI01022393   IPI01018147   IPI01022542   IPI00446036   
Protein Interaction databases
DIP (DOE-UCLA)A6QL63
IntAct (EBI)A6QL63
FunCoupENSG00000151136
BioGRIDBTBD11
STRING (EMBL)BTBD11
ZODIACBTBD11
Ontologies - Pathways
QuickGOA6QL63
Ontology : AmiGOcytoplasm  integral component of membrane  SCF ubiquitin ligase complex  regulation of proteolysis  ubiquitin protein ligase binding  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  protein heterodimerization activity  SMAD protein signal transduction  
Ontology : EGO-EBIcytoplasm  integral component of membrane  SCF ubiquitin ligase complex  regulation of proteolysis  ubiquitin protein ligase binding  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  protein heterodimerization activity  SMAD protein signal transduction  
NDEx NetworkBTBD11
Atlas of Cancer Signalling NetworkBTBD11
Wikipedia pathwaysBTBD11
Orthology - Evolution
OrthoDB121551
GeneTree (enSembl)ENSG00000151136
Phylogenetic Trees/Animal Genes : TreeFamBTBD11
HOVERGENA6QL63
HOGENOMA6QL63
Homologs : HomoloGeneBTBD11
Homology/Alignments : Family Browser (UCSC)BTBD11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD11
dbVarBTBD11
ClinVarBTBD11
1000_GenomesBTBD11 
Exome Variant ServerBTBD11
ExAC (Exome Aggregation Consortium)BTBD11 (select the gene name)
Genetic variants : HAPMAP121551
Genomic Variants (DGV)BTBD11 [DGVbeta]
DECIPHERBTBD11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTBD11 
Mutations
ICGC Data PortalBTBD11 
TCGA Data PortalBTBD11 
Broad Tumor PortalBTBD11
OASIS PortalBTBD11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTBD11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTBD11
DgiDB (Drug Gene Interaction Database)BTBD11
DoCM (Curated mutations)BTBD11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTBD11 (select a term)
intoGenBTBD11
Cancer3DBTBD11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBTBD11
Genetic Testing Registry BTBD11
NextProtA6QL63 [Medical]
TSGene121551
GENETestsBTBD11
Huge Navigator BTBD11 [HugePedia]
snp3D : Map Gene to Disease121551
BioCentury BCIQBTBD11
ClinGenBTBD11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121551
Chemical/Pharm GKB GenePA134975180
Clinical trialBTBD11
Miscellaneous
canSAR (ICR)BTBD11 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTBD11
EVEXBTBD11
GoPubMedBTBD11
iHOPBTBD11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:02:04 CEST 2017

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