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BTBD16 (BTB domain containing 16)

Identity

Alias (NCBI)C10orf87
HGNC (Hugo) BTBD16
HGNC Alias symbFLJ25359
Em:AC061711.1
HGNC Previous nameC10orf87
HGNC Previous namechromosome 10 open reading frame 87
 BTB (POZ) domain containing 16
LocusID (NCBI) 118663
Atlas_Id 60825
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 122271296 and ends at 122338159 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)BTBD16   26340
Cards
Entrez_Gene (NCBI)BTBD16    BTB domain containing 16
AliasesC10orf87
GeneCards (Weizmann)BTBD16
Ensembl hg19 (Hinxton)ENSG00000138152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138152 [Gene_View]  ENSG00000138152 [Sequence]  chr10:122271296-122338159 [Contig_View]  BTBD16 [Vega]
ICGC DataPortalENSG00000138152
TCGA cBioPortalBTBD16
AceView (NCBI)BTBD16
Genatlas (Paris)BTBD16
SOURCE (Princeton)BTBD16
Genetics Home Reference (NIH)BTBD16
Genomic and cartography
GoldenPath hg38 (UCSC)BTBD16  -     chr10:122271296-122338159 +  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTBD16  -     10q26.13   [Description]    (hg19-Feb_2009)
GoldenPathBTBD16 - 10q26.13 [CytoView hg19]  BTBD16 - 10q26.13 [CytoView hg38]
ImmunoBaseENSG00000138152
Genome Data Viewer NCBIBTBD16 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA926746 AK058088 BC109261 BC109262 DB052430
RefSeq transcript (Entrez)NM_001318189 NM_144587
Consensus coding sequences : CCDS (NCBI)BTBD16
Gene ExpressionBTBD16 [ NCBI-GEO ]   BTBD16 [ EBI - ARRAY_EXPRESS ]   BTBD16 [ SEEK ]   BTBD16 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD16 [ Firebrowse - Broad ]
GenevisibleExpression of BTBD16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118663
GTEX Portal (Tissue expression)BTBD16
Human Protein AtlasENSG00000138152-BTBD16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32M84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32M84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32M84
PhosPhoSitePlusQ32M84
Domains : Interpro (EBI)BTBD16    SKP1/BTB/POZ_sf   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BTBD16
SuperfamilyQ32M84
AlphaFold pdb e-kbQ32M84   
Human Protein Atlas [tissue]ENSG00000138152-BTBD16 [tissue]
HPRD12594
Protein Interaction databases
DIP (DOE-UCLA)Q32M84
IntAct (EBI)Q32M84
BioGRIDBTBD16
STRING (EMBL)BTBD16
ZODIACBTBD16
Ontologies - Pathways
QuickGOQ32M84
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkBTBD16
Atlas of Cancer Signalling NetworkBTBD16
Wikipedia pathwaysBTBD16
Orthology - Evolution
OrthoDB118663
GeneTree (enSembl)ENSG00000138152
Phylogenetic Trees/Animal Genes : TreeFamBTBD16
Homologs : HomoloGeneBTBD16
Homology/Alignments : Family Browser (UCSC)BTBD16
Gene fusions - Rearrangements
Fusion : QuiverBTBD16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD16
dbVarBTBD16
ClinVarBTBD16
MonarchBTBD16
1000_GenomesBTBD16 
Exome Variant ServerBTBD16
GNOMAD BrowserENSG00000138152
Varsome BrowserBTBD16
ACMGBTBD16 variants
VarityQ32M84
Genomic Variants (DGV)BTBD16 [DGVbeta]
DECIPHERBTBD16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTBD16 
Mutations
ICGC Data PortalBTBD16 
TCGA Data PortalBTBD16 
Broad Tumor PortalBTBD16
OASIS PortalBTBD16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBTBD16
Mutations and Diseases : HGMDBTBD16
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaBTBD16
DgiDB (Drug Gene Interaction Database)BTBD16
DoCM (Curated mutations)BTBD16
CIViC (Clinical Interpretations of Variants in Cancer)BTBD16
Cancer3DBTBD16
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBTBD16
MedgenBTBD16
Genetic Testing Registry BTBD16
NextProtQ32M84 [Medical]
GENETestsBTBD16
Target ValidationBTBD16
Huge Navigator BTBD16 [HugePedia]
ClinGenBTBD16
Clinical trials, drugs, therapy
MyCancerGenomeBTBD16
Protein Interactions : CTDBTBD16
Pharm GKB GenePA134900594
PharosQ32M84
Clinical trialBTBD16
Miscellaneous
canSAR (ICR)BTBD16
HarmonizomeBTBD16
DataMed IndexBTBD16
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBTBD16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:35 CEST 2021

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