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BTBD16 (BTB domain containing 16)

Identity

Alias_namesC10orf87
chromosome 10 open reading frame 87
BTB (POZ) domain containing 16
Alias_symbol (synonym)FLJ25359
Em:AC061711.1
Other alias
HGNC (Hugo) BTBD16
LocusID (NCBI) 118663
Atlas_Id 60825
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 122271296 and ends at 122338180 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BTBD16   26340
Cards
Entrez_Gene (NCBI)BTBD16  118663  BTB domain containing 16
AliasesC10orf87
GeneCards (Weizmann)BTBD16
Ensembl hg19 (Hinxton)ENSG00000138152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138152 [Gene_View]  ENSG00000138152 [Sequence]  chr10:122271296-122338180 [Contig_View]  BTBD16 [Vega]
ICGC DataPortalENSG00000138152
TCGA cBioPortalBTBD16
AceView (NCBI)BTBD16
Genatlas (Paris)BTBD16
WikiGenes118663
SOURCE (Princeton)BTBD16
Genetics Home Reference (NIH)BTBD16
Genomic and cartography
GoldenPath hg38 (UCSC)BTBD16  -     chr10:122271296-122338180 +  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTBD16  -     10q26.13   [Description]    (hg19-Feb_2009)
EnsemblBTBD16 - 10q26.13 [CytoView hg19]  BTBD16 - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBIBTBD16 [Mapview hg19]  BTBD16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA926746 AK058088 BC109261 BC109262 DB052430
RefSeq transcript (Entrez)NM_001318189 NM_144587
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTBD16
Cluster EST : UnigeneHs.422466 [ NCBI ]
CGAP (NCI)Hs.422466
Alternative Splicing GalleryENSG00000138152
Gene ExpressionBTBD16 [ NCBI-GEO ]   BTBD16 [ EBI - ARRAY_EXPRESS ]   BTBD16 [ SEEK ]   BTBD16 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118663
GTEX Portal (Tissue expression)BTBD16
Human Protein AtlasENSG00000138152-BTBD16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32M84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32M84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32M84
Splice isoforms : SwissVarQ32M84
PhosPhoSitePlusQ32M84
Domains : Interpro (EBI)SKP1/BTB/POZ   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BTBD16
DMDM Disease mutations118663
Blocks (Seattle)BTBD16
SuperfamilyQ32M84
Human Protein Atlas [tissue]ENSG00000138152-BTBD16 [tissue]
Peptide AtlasQ32M84
HPRD12594
IPIIPI00872180   IPI00307317   
Protein Interaction databases
DIP (DOE-UCLA)Q32M84
IntAct (EBI)Q32M84
FunCoupENSG00000138152
BioGRIDBTBD16
STRING (EMBL)BTBD16
ZODIACBTBD16
Ontologies - Pathways
QuickGOQ32M84
Ontology : AmiGOubiquitin ligase complex  nucleus  
Ontology : EGO-EBIubiquitin ligase complex  nucleus  
NDEx NetworkBTBD16
Atlas of Cancer Signalling NetworkBTBD16
Wikipedia pathwaysBTBD16
Orthology - Evolution
OrthoDB118663
GeneTree (enSembl)ENSG00000138152
Phylogenetic Trees/Animal Genes : TreeFamBTBD16
HOVERGENQ32M84
HOGENOMQ32M84
Homologs : HomoloGeneBTBD16
Homology/Alignments : Family Browser (UCSC)BTBD16
Gene fusions - Rearrangements
Fusion : QuiverBTBD16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD16
dbVarBTBD16
ClinVarBTBD16
1000_GenomesBTBD16 
Exome Variant ServerBTBD16
ExAC (Exome Aggregation Consortium)ENSG00000138152
GNOMAD BrowserENSG00000138152
Varsome BrowserBTBD16
Genetic variants : HAPMAP118663
Genomic Variants (DGV)BTBD16 [DGVbeta]
DECIPHERBTBD16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTBD16 
Mutations
ICGC Data PortalBTBD16 
TCGA Data PortalBTBD16 
Broad Tumor PortalBTBD16
OASIS PortalBTBD16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTBD16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTBD16
DgiDB (Drug Gene Interaction Database)BTBD16
DoCM (Curated mutations)BTBD16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTBD16 (select a term)
intoGenBTBD16
Cancer3DBTBD16(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBTBD16
MedgenBTBD16
Genetic Testing Registry BTBD16
NextProtQ32M84 [Medical]
TSGene118663
GENETestsBTBD16
Target ValidationBTBD16
Huge Navigator BTBD16 [HugePedia]
snp3D : Map Gene to Disease118663
BioCentury BCIQBTBD16
ClinGenBTBD16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118663
Chemical/Pharm GKB GenePA134900594
Clinical trialBTBD16
Miscellaneous
canSAR (ICR)BTBD16 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTBD16
EVEXBTBD16
GoPubMedBTBD16
iHOPBTBD16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:37:06 CEST 2018
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