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BTBD17 (BTB domain containing 17)

Identity

Alias (NCBI)BTBD17A
LGALS3BPL
TANGO10A
HGNC (Hugo) BTBD17
HGNC Alias symbLGALS3BPL
BTBD17A
TANGO10A
HGNC Alias nametransport and golgi organization 10 homolog A (Drosophila)
HGNC Previous nameBTB (POZ) domain containing 17
LocusID (NCBI) 388419
Atlas_Id 60826
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74356416 and ends at 74361868 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)BTBD17   33758
Cards
Entrez_Gene (NCBI)BTBD17    BTB domain containing 17
AliasesBTBD17A; LGALS3BPL; TANGO10A
GeneCards (Weizmann)BTBD17
Ensembl hg19 (Hinxton)ENSG00000204347 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204347 [Gene_View]  ENSG00000204347 [Sequence]  chr17:74356416-74361868 [Contig_View]  BTBD17 [Vega]
ICGC DataPortalENSG00000204347
TCGA cBioPortalBTBD17
AceView (NCBI)BTBD17
Genatlas (Paris)BTBD17
SOURCE (Princeton)BTBD17
Genetics Home Reference (NIH)BTBD17
Genomic and cartography
GoldenPath hg38 (UCSC)BTBD17  -     chr17:74356416-74361868 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTBD17  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathBTBD17 - 17q25.1 [CytoView hg19]  BTBD17 - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000204347
Genome Data Viewer NCBIBTBD17 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080466
Consensus coding sequences : CCDS (NCBI)BTBD17
Gene ExpressionBTBD17 [ NCBI-GEO ]   BTBD17 [ EBI - ARRAY_EXPRESS ]   BTBD17 [ SEEK ]   BTBD17 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD17 [ Firebrowse - Broad ]
GenevisibleExpression of BTBD17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388419
GTEX Portal (Tissue expression)BTBD17
Human Protein AtlasENSG00000204347-BTBD17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NE02   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NE02  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NE02
PhosPhoSitePlusA6NE02
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB/POZ_dom    SKP1/BTB/POZ_sf   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)   
Domain families : Pfam (NCBI)pfam07707    pfam00651   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  
Conserved Domain (NCBI)BTBD17
SuperfamilyA6NE02
AlphaFold pdb e-kbA6NE02   
Human Protein Atlas [tissue]ENSG00000204347-BTBD17 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NE02
IntAct (EBI)A6NE02
BioGRIDBTBD17
STRING (EMBL)BTBD17
ZODIACBTBD17
Ontologies - Pathways
QuickGOA6NE02
Ontology : AmiGOextracellular region  cytoplasm  plasma membrane  response to virus  negative regulation of viral genome replication  
Ontology : EGO-EBIextracellular region  cytoplasm  plasma membrane  response to virus  negative regulation of viral genome replication  
NDEx NetworkBTBD17
Atlas of Cancer Signalling NetworkBTBD17
Wikipedia pathwaysBTBD17
Orthology - Evolution
OrthoDB388419
GeneTree (enSembl)ENSG00000204347
Phylogenetic Trees/Animal Genes : TreeFamBTBD17
Homologs : HomoloGeneBTBD17
Homology/Alignments : Family Browser (UCSC)BTBD17
Gene fusions - Rearrangements
Fusion : QuiverBTBD17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD17
dbVarBTBD17
ClinVarBTBD17
MonarchBTBD17
1000_GenomesBTBD17 
Exome Variant ServerBTBD17
GNOMAD BrowserENSG00000204347
Varsome BrowserBTBD17
ACMGBTBD17 variants
VarityA6NE02
Genomic Variants (DGV)BTBD17 [DGVbeta]
DECIPHERBTBD17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTBD17 
Mutations
ICGC Data PortalBTBD17 
TCGA Data PortalBTBD17 
Broad Tumor PortalBTBD17
OASIS PortalBTBD17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBTBD17
Mutations and Diseases : HGMDBTBD17
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaBTBD17
DgiDB (Drug Gene Interaction Database)BTBD17
DoCM (Curated mutations)BTBD17
CIViC (Clinical Interpretations of Variants in Cancer)BTBD17
Cancer3DBTBD17
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBTBD17
MedgenBTBD17
Genetic Testing Registry BTBD17
NextProtA6NE02 [Medical]
GENETestsBTBD17
Target ValidationBTBD17
Huge Navigator BTBD17 [HugePedia]
ClinGenBTBD17
Clinical trials, drugs, therapy
MyCancerGenomeBTBD17
Protein Interactions : CTDBTBD17
Pharm GKB GenePA162377627
PharosA6NE02
Clinical trialBTBD17
Miscellaneous
canSAR (ICR)BTBD17
HarmonizomeBTBD17
DataMed IndexBTBD17
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBTBD17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:36 CEST 2021

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