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BTBD17 (BTB domain containing 17)

Identity

Alias_namesBTB (POZ) domain containing 17
Alias_symbol (synonym)LGALS3BPL
BTBD17A
TANGO10A
Other alias
HGNC (Hugo) BTBD17
LocusID (NCBI) 388419
Atlas_Id 60826
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74356416 and ends at 74361819 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTBD17   33758
Cards
Entrez_Gene (NCBI)BTBD17  388419  BTB domain containing 17
AliasesBTBD17A; LGALS3BPL; TANGO10A
GeneCards (Weizmann)BTBD17
Ensembl hg19 (Hinxton)ENSG00000204347 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204347 [Gene_View]  chr17:74356416-74361819 [Contig_View]  BTBD17 [Vega]
ICGC DataPortalENSG00000204347
TCGA cBioPortalBTBD17
AceView (NCBI)BTBD17
Genatlas (Paris)BTBD17
WikiGenes388419
SOURCE (Princeton)BTBD17
Genetics Home Reference (NIH)BTBD17
Genomic and cartography
GoldenPath hg38 (UCSC)BTBD17  -     chr17:74356416-74361819 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTBD17  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblBTBD17 - 17q25.1 [CytoView hg19]  BTBD17 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIBTBD17 [Mapview hg19]  BTBD17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC168374
RefSeq transcript (Entrez)NM_001080466
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTBD17
Cluster EST : UnigeneHs.211870 [ NCBI ]
CGAP (NCI)Hs.211870
Alternative Splicing GalleryENSG00000204347
Gene ExpressionBTBD17 [ NCBI-GEO ]   BTBD17 [ EBI - ARRAY_EXPRESS ]   BTBD17 [ SEEK ]   BTBD17 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388419
GTEX Portal (Tissue expression)BTBD17
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NE02   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NE02  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NE02
Splice isoforms : SwissVarA6NE02
PhosPhoSitePlusA6NE02
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB/POZ_dom    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)   
Domain families : Pfam (NCBI)pfam07707    pfam00651   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  
Conserved Domain (NCBI)BTBD17
DMDM Disease mutations388419
Blocks (Seattle)BTBD17
SuperfamilyA6NE02
Human Protein AtlasENSG00000204347
Peptide AtlasA6NE02
IPIIPI00373911   
Protein Interaction databases
DIP (DOE-UCLA)A6NE02
IntAct (EBI)A6NE02
FunCoupENSG00000204347
BioGRIDBTBD17
STRING (EMBL)BTBD17
ZODIACBTBD17
Ontologies - Pathways
QuickGOA6NE02
Ontology : AmiGOextracellular region  cytoplasm  plasma membrane  response to virus  negative regulation of viral genome replication  
Ontology : EGO-EBIextracellular region  cytoplasm  plasma membrane  response to virus  negative regulation of viral genome replication  
NDEx NetworkBTBD17
Atlas of Cancer Signalling NetworkBTBD17
Wikipedia pathwaysBTBD17
Orthology - Evolution
OrthoDB388419
GeneTree (enSembl)ENSG00000204347
Phylogenetic Trees/Animal Genes : TreeFamBTBD17
HOVERGENA6NE02
HOGENOMA6NE02
Homologs : HomoloGeneBTBD17
Homology/Alignments : Family Browser (UCSC)BTBD17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD17
dbVarBTBD17
ClinVarBTBD17
1000_GenomesBTBD17 
Exome Variant ServerBTBD17
ExAC (Exome Aggregation Consortium)BTBD17 (select the gene name)
Genetic variants : HAPMAP388419
Genomic Variants (DGV)BTBD17 [DGVbeta]
DECIPHERBTBD17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTBD17 
Mutations
ICGC Data PortalBTBD17 
TCGA Data PortalBTBD17 
Broad Tumor PortalBTBD17
OASIS PortalBTBD17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTBD17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTBD17
DgiDB (Drug Gene Interaction Database)BTBD17
DoCM (Curated mutations)BTBD17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTBD17 (select a term)
intoGenBTBD17
Cancer3DBTBD17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBTBD17
Genetic Testing Registry BTBD17
NextProtA6NE02 [Medical]
TSGene388419
GENETestsBTBD17
Target ValidationBTBD17
Huge Navigator BTBD17 [HugePedia]
snp3D : Map Gene to Disease388419
BioCentury BCIQBTBD17
ClinGenBTBD17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388419
Chemical/Pharm GKB GenePA162377627
Clinical trialBTBD17
Miscellaneous
canSAR (ICR)BTBD17 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTBD17
EVEXBTBD17
GoPubMedBTBD17
iHOPBTBD17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:57 CEST 2017

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