Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BTBD19 (BTB domain containing 19)

Identity

Alias_namesBTB (POZ) domain containing 19
Other alias-
HGNC (Hugo) BTBD19
LocusID (NCBI) 149478
Atlas_Id 60827
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 44808482 and ends at 44814129 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTBD19   27145
Cards
Entrez_Gene (NCBI)BTBD19  149478  BTB domain containing 19
Aliases
GeneCards (Weizmann)BTBD19
Ensembl hg19 (Hinxton)ENSG00000222009 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000222009 [Gene_View]  chr1:44808482-44814129 [Contig_View]  BTBD19 [Vega]
ICGC DataPortalENSG00000222009
TCGA cBioPortalBTBD19
AceView (NCBI)BTBD19
Genatlas (Paris)BTBD19
WikiGenes149478
SOURCE (Princeton)BTBD19
Genetics Home Reference (NIH)BTBD19
Genomic and cartography
GoldenPath hg38 (UCSC)BTBD19  -     chr1:44808482-44814129 +  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTBD19  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblBTBD19 - 1p34.1 [CytoView hg19]  BTBD19 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIBTBD19 [Mapview hg19]  BTBD19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056150 AK304611
RefSeq transcript (Entrez)NM_001136537
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTBD19
Cluster EST : UnigeneHs.632400 [ NCBI ]
CGAP (NCI)Hs.632400
Alternative Splicing GalleryENSG00000222009
Gene ExpressionBTBD19 [ NCBI-GEO ]   BTBD19 [ EBI - ARRAY_EXPRESS ]   BTBD19 [ SEEK ]   BTBD19 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149478
GTEX Portal (Tissue expression)BTBD19
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JJ37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JJ37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JJ37
Splice isoforms : SwissVarC9JJ37
PhosPhoSitePlusC9JJ37
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB/POZ_dom    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)   
Domain families : Pfam (NCBI)pfam07707    pfam00651   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  
Conserved Domain (NCBI)BTBD19
DMDM Disease mutations149478
Blocks (Seattle)BTBD19
SuperfamilyC9JJ37
Human Protein AtlasENSG00000222009
Peptide AtlasC9JJ37
IPIIPI00917712   IPI00889076   
Protein Interaction databases
DIP (DOE-UCLA)C9JJ37
IntAct (EBI)C9JJ37
FunCoupENSG00000222009
BioGRIDBTBD19
STRING (EMBL)BTBD19
ZODIACBTBD19
Ontologies - Pathways
QuickGOC9JJ37
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkBTBD19
Atlas of Cancer Signalling NetworkBTBD19
Wikipedia pathwaysBTBD19
Orthology - Evolution
OrthoDB149478
GeneTree (enSembl)ENSG00000222009
Phylogenetic Trees/Animal Genes : TreeFamBTBD19
HOVERGENC9JJ37
HOGENOMC9JJ37
Homologs : HomoloGeneBTBD19
Homology/Alignments : Family Browser (UCSC)BTBD19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD19
dbVarBTBD19
ClinVarBTBD19
1000_GenomesBTBD19 
Exome Variant ServerBTBD19
ExAC (Exome Aggregation Consortium)BTBD19 (select the gene name)
Genetic variants : HAPMAP149478
Genomic Variants (DGV)BTBD19 [DGVbeta]
DECIPHERBTBD19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTBD19 
Mutations
ICGC Data PortalBTBD19 
TCGA Data PortalBTBD19 
Broad Tumor PortalBTBD19
OASIS PortalBTBD19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTBD19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTBD19
DgiDB (Drug Gene Interaction Database)BTBD19
DoCM (Curated mutations)BTBD19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTBD19 (select a term)
intoGenBTBD19
Cancer3DBTBD19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBTBD19
Genetic Testing Registry BTBD19
NextProtC9JJ37 [Medical]
TSGene149478
GENETestsBTBD19
Target ValidationBTBD19
Huge Navigator BTBD19 [HugePedia]
snp3D : Map Gene to Disease149478
BioCentury BCIQBTBD19
ClinGenBTBD19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149478
Chemical/Pharm GKB GenePA165750488
Clinical trialBTBD19
Miscellaneous
canSAR (ICR)BTBD19 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTBD19
EVEXBTBD19
GoPubMedBTBD19
iHOPBTBD19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:39:57 CEST 2017

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