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BTBD3 (BTB (POZ) domain containing 3)

Identity

Alias_namesBTB (POZ) domain containing 3
Alias_symbol (synonym)KIAA0952
dJ742J24.1
Other alias
HGNC (Hugo) BTBD3
LocusID (NCBI) 22903
Atlas_Id 60828
Location 20p12.2  [Link to chromosome band 20p12]
Location_base_pair Starts at 11873141 and ends at 11907243 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BTBD3 (20p12.2) / GCNT2 (6p24.3)BTBD3 (20p12.2) / SASH1 (6q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTBD3   15854
Cards
Entrez_Gene (NCBI)BTBD3  22903  BTB (POZ) domain containing 3
AliasesdJ742J24.1
GeneCards (Weizmann)BTBD3
Ensembl hg19 (Hinxton)ENSG00000132640 [Gene_View]  chr20:11873141-11907243 [Contig_View]  BTBD3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132640 [Gene_View]  chr20:11873141-11907243 [Contig_View]  BTBD3 [Vega]
ICGC DataPortalENSG00000132640
TCGA cBioPortalBTBD3
AceView (NCBI)BTBD3
Genatlas (Paris)BTBD3
WikiGenes22903
SOURCE (Princeton)BTBD3
Genetics Home Reference (NIH)BTBD3
Genomic and cartography
GoldenPath hg19 (UCSC)BTBD3  -     chr20:11873141-11907243 +  20p12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BTBD3  -     20p12.2   [Description]    (hg38-Dec_2013)
EnsemblBTBD3 - 20p12.2 [CytoView hg19]  BTBD3 - 20p12.2 [CytoView hg38]
Mapping of homologs : NCBIBTBD3 [Mapview hg19]  BTBD3 [Mapview hg38]
OMIM615566   
Gene and transcription
Genbank (Entrez)AA127941 AB023169 AK024349 AK296364 AK299281
RefSeq transcript (Entrez)NM_001282550 NM_001282551 NM_001282552 NM_001282554 NM_014962 NM_181443
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)BTBD3
Cluster EST : UnigeneHs.709366 [ NCBI ]
CGAP (NCI)Hs.709366
Alternative Splicing GalleryENSG00000132640
Gene ExpressionBTBD3 [ NCBI-GEO ]   BTBD3 [ EBI - ARRAY_EXPRESS ]   BTBD3 [ SEEK ]   BTBD3 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22903
GTEX Portal (Tissue expression)BTBD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2F9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2F9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2F9
Splice isoforms : SwissVarQ9Y2F9
PhosPhoSitePlusQ9Y2F9
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB/POZ-like    BTB/POZ_fold    BTB_POZ    PHR   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    PHR (PF08005)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam08005   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  
Conserved Domain (NCBI)BTBD3
DMDM Disease mutations22903
Blocks (Seattle)BTBD3
SuperfamilyQ9Y2F9
Human Protein AtlasENSG00000132640
Peptide AtlasQ9Y2F9
HPRD12538
IPIIPI00375386   IPI00007300   IPI00878010   IPI00878510   IPI00878339   IPI00878808   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2F9
IntAct (EBI)Q9Y2F9
FunCoupENSG00000132640
BioGRIDBTBD3
STRING (EMBL)BTBD3
ZODIACBTBD3
Ontologies - Pathways
QuickGOQ9Y2F9
Ontology : AmiGOnucleus  cytosol  cerebral cortex development  dendrite morphogenesis  
Ontology : EGO-EBInucleus  cytosol  cerebral cortex development  dendrite morphogenesis  
NDEx NetworkBTBD3
Atlas of Cancer Signalling NetworkBTBD3
Wikipedia pathwaysBTBD3
Orthology - Evolution
OrthoDB22903
GeneTree (enSembl)ENSG00000132640
Phylogenetic Trees/Animal Genes : TreeFamBTBD3
HOVERGENQ9Y2F9
HOGENOMQ9Y2F9
Homologs : HomoloGeneBTBD3
Homology/Alignments : Family Browser (UCSC)BTBD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD3
dbVarBTBD3
ClinVarBTBD3
1000_GenomesBTBD3 
Exome Variant ServerBTBD3
ExAC (Exome Aggregation Consortium)BTBD3 (select the gene name)
Genetic variants : HAPMAP22903
Genomic Variants (DGV)BTBD3 [DGVbeta]
DECIPHER (Syndromes)20:11873141-11907243  ENSG00000132640
CONAN: Copy Number AnalysisBTBD3 
Mutations
ICGC Data PortalBTBD3 
TCGA Data PortalBTBD3 
Broad Tumor PortalBTBD3
OASIS PortalBTBD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTBD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTBD3
DgiDB (Drug Gene Interaction Database)BTBD3
DoCM (Curated mutations)BTBD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTBD3 (select a term)
intoGenBTBD3
Cancer3DBTBD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615566   
Orphanet
MedgenBTBD3
Genetic Testing Registry BTBD3
NextProtQ9Y2F9 [Medical]
TSGene22903
GENETestsBTBD3
Huge Navigator BTBD3 [HugePedia]
snp3D : Map Gene to Disease22903
BioCentury BCIQBTBD3
ClinGenBTBD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22903
Chemical/Pharm GKB GenePA25440
Clinical trialBTBD3
Miscellaneous
canSAR (ICR)BTBD3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTBD3
EVEXBTBD3
GoPubMedBTBD3
iHOPBTBD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:07 CET 2017

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