Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BTBD6 (BTB domain containing 6)

Identity

Alias_namesBTB (POZ) domain containing 6
Alias_symbol (synonym)BDPL
Other alias
HGNC (Hugo) BTBD6
LocusID (NCBI) 90135
Atlas_Id 60829
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 105248542 and ends at 105251093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BTBD6 (14q32.33) / CNR2 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTBD6   19897
Cards
Entrez_Gene (NCBI)BTBD6  90135  BTB domain containing 6
AliasesBDPL
GeneCards (Weizmann)BTBD6
Ensembl hg19 (Hinxton)ENSG00000184887 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184887 [Gene_View]  chr14:105248542-105251093 [Contig_View]  BTBD6 [Vega]
ICGC DataPortalENSG00000184887
TCGA cBioPortalBTBD6
AceView (NCBI)BTBD6
Genatlas (Paris)BTBD6
WikiGenes90135
SOURCE (Princeton)BTBD6
Genetics Home Reference (NIH)BTBD6
Genomic and cartography
GoldenPath hg38 (UCSC)BTBD6  -     chr14:105248542-105251093 +  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTBD6  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblBTBD6 - 14q32.33 [CytoView hg19]  BTBD6 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBIBTBD6 [Mapview hg19]  BTBD6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086420 AF173358 AF353674 BC006414 BC042525
RefSeq transcript (Entrez)NM_033271
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTBD6
Cluster EST : UnigeneHs.7367 [ NCBI ]
CGAP (NCI)Hs.7367
Alternative Splicing GalleryENSG00000184887
Gene ExpressionBTBD6 [ NCBI-GEO ]   BTBD6 [ EBI - ARRAY_EXPRESS ]   BTBD6 [ SEEK ]   BTBD6 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90135
GTEX Portal (Tissue expression)BTBD6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KE9
Splice isoforms : SwissVarQ96KE9
PhosPhoSitePlusQ96KE9
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB/POZ_dom    PHR    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    PHR (PF08005)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam08005   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  
Conserved Domain (NCBI)BTBD6
DMDM Disease mutations90135
Blocks (Seattle)BTBD6
PDB (SRS)2VKP   
PDB (PDBSum)2VKP   
PDB (IMB)2VKP   
PDB (RSDB)2VKP   
Structural Biology KnowledgeBase2VKP   
SCOP (Structural Classification of Proteins)2VKP   
CATH (Classification of proteins structures)2VKP   
SuperfamilyQ96KE9
Human Protein AtlasENSG00000184887
Peptide AtlasQ96KE9
HPRD12540
IPIIPI00064579   IPI00943024   IPI01021287   
Protein Interaction databases
DIP (DOE-UCLA)Q96KE9
IntAct (EBI)Q96KE9
FunCoupENSG00000184887
BioGRIDBTBD6
STRING (EMBL)BTBD6
ZODIACBTBD6
Ontologies - Pathways
QuickGOQ96KE9
Ontology : AmiGOP-body  cytosol  SCF ubiquitin ligase complex  neurogenesis  regulation of proteolysis  ubiquitin protein ligase binding  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIP-body  cytosol  SCF ubiquitin ligase complex  neurogenesis  regulation of proteolysis  ubiquitin protein ligase binding  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  
NDEx NetworkBTBD6
Atlas of Cancer Signalling NetworkBTBD6
Wikipedia pathwaysBTBD6
Orthology - Evolution
OrthoDB90135
GeneTree (enSembl)ENSG00000184887
Phylogenetic Trees/Animal Genes : TreeFamBTBD6
HOVERGENQ96KE9
HOGENOMQ96KE9
Homologs : HomoloGeneBTBD6
Homology/Alignments : Family Browser (UCSC)BTBD6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD6
dbVarBTBD6
ClinVarBTBD6
1000_GenomesBTBD6 
Exome Variant ServerBTBD6
ExAC (Exome Aggregation Consortium)BTBD6 (select the gene name)
Genetic variants : HAPMAP90135
Genomic Variants (DGV)BTBD6 [DGVbeta]
DECIPHERBTBD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTBD6 
Mutations
ICGC Data PortalBTBD6 
TCGA Data PortalBTBD6 
Broad Tumor PortalBTBD6
OASIS PortalBTBD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTBD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTBD6
DgiDB (Drug Gene Interaction Database)BTBD6
DoCM (Curated mutations)BTBD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTBD6 (select a term)
intoGenBTBD6
Cancer3DBTBD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBTBD6
Genetic Testing Registry BTBD6
NextProtQ96KE9 [Medical]
TSGene90135
GENETestsBTBD6
Target ValidationBTBD6
Huge Navigator BTBD6 [HugePedia]
snp3D : Map Gene to Disease90135
BioCentury BCIQBTBD6
ClinGenBTBD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90135
Chemical/Pharm GKB GenePA128394741
Clinical trialBTBD6
Miscellaneous
canSAR (ICR)BTBD6 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTBD6
EVEXBTBD6
GoPubMedBTBD6
iHOPBTBD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:10:18 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.