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BTBD8 (BTB domain containing 8)

Identity

Alias_namesBTB (POZ) domain containing 8
Other alias-
HGNC (Hugo) BTBD8
LocusID (NCBI) 284697
Atlas_Id 60830
Location 1p22.1  [Link to chromosome band 1p22]
Location_base_pair Starts at 92080305 and ends at 92147841 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTBD8   21019
Cards
Entrez_Gene (NCBI)BTBD8  284697  BTB domain containing 8
Aliases
GeneCards (Weizmann)BTBD8
Ensembl hg19 (Hinxton)ENSG00000189195 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189195 [Gene_View]  chr1:92080305-92147841 [Contig_View]  BTBD8 [Vega]
ICGC DataPortalENSG00000189195
TCGA cBioPortalBTBD8
AceView (NCBI)BTBD8
Genatlas (Paris)BTBD8
WikiGenes284697
SOURCE (Princeton)BTBD8
Genetics Home Reference (NIH)BTBD8
Genomic and cartography
GoldenPath hg38 (UCSC)BTBD8  -     chr1:92080305-92147841 +  1p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTBD8  -     1p22.1   [Description]    (hg19-Feb_2009)
EnsemblBTBD8 - 1p22.1 [CytoView hg19]  BTBD8 - 1p22.1 [CytoView hg38]
Mapping of homologs : NCBIBTBD8 [Mapview hg19]  BTBD8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK296516 AY346333 BC013922
RefSeq transcript (Entrez)NM_183242
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTBD8
Cluster EST : UnigeneHs.676102 [ NCBI ]
CGAP (NCI)Hs.676102
Alternative Splicing GalleryENSG00000189195
Gene ExpressionBTBD8 [ NCBI-GEO ]   BTBD8 [ EBI - ARRAY_EXPRESS ]   BTBD8 [ SEEK ]   BTBD8 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284697
GTEX Portal (Tissue expression)BTBD8
Human Protein AtlasENSG00000189195-BTBD8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5XKL5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5XKL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5XKL5
Splice isoforms : SwissVarQ5XKL5
PhosPhoSitePlusQ5XKL5
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)BTBD8
DMDM Disease mutations284697
Blocks (Seattle)BTBD8
SuperfamilyQ5XKL5
Human Protein Atlas [tissue]ENSG00000189195-BTBD8 [tissue]
Peptide AtlasQ5XKL5
HPRD12542
IPIIPI00478399   IPI00419861   
Protein Interaction databases
DIP (DOE-UCLA)Q5XKL5
IntAct (EBI)Q5XKL5
FunCoupENSG00000189195
BioGRIDBTBD8
STRING (EMBL)BTBD8
ZODIACBTBD8
Ontologies - Pathways
QuickGOQ5XKL5
Ontology : AmiGOtranscription regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBItranscription regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  positive regulation of transcription, DNA-templated  
NDEx NetworkBTBD8
Atlas of Cancer Signalling NetworkBTBD8
Wikipedia pathwaysBTBD8
Orthology - Evolution
OrthoDB284697
GeneTree (enSembl)ENSG00000189195
Phylogenetic Trees/Animal Genes : TreeFamBTBD8
HOVERGENQ5XKL5
HOGENOMQ5XKL5
Homologs : HomoloGeneBTBD8
Homology/Alignments : Family Browser (UCSC)BTBD8
Gene fusions - Rearrangements
Tumor Fusion PortalBTBD8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD8
dbVarBTBD8
ClinVarBTBD8
1000_GenomesBTBD8 
Exome Variant ServerBTBD8
ExAC (Exome Aggregation Consortium)ENSG00000189195
GNOMAD BrowserENSG00000189195
Genetic variants : HAPMAP284697
Genomic Variants (DGV)BTBD8 [DGVbeta]
DECIPHERBTBD8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTBD8 
Mutations
ICGC Data PortalBTBD8 
TCGA Data PortalBTBD8 
Broad Tumor PortalBTBD8
OASIS PortalBTBD8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTBD8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTBD8
DgiDB (Drug Gene Interaction Database)BTBD8
DoCM (Curated mutations)BTBD8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTBD8 (select a term)
intoGenBTBD8
Cancer3DBTBD8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBTBD8
MedgenBTBD8
Genetic Testing Registry BTBD8
NextProtQ5XKL5 [Medical]
TSGene284697
GENETestsBTBD8
Target ValidationBTBD8
Huge Navigator BTBD8 [HugePedia]
snp3D : Map Gene to Disease284697
BioCentury BCIQBTBD8
ClinGenBTBD8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284697
Chemical/Pharm GKB GenePA134916444
Clinical trialBTBD8
Miscellaneous
canSAR (ICR)BTBD8 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTBD8
EVEXBTBD8
GoPubMedBTBD8
iHOPBTBD8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 12:59:21 CET 2017

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