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BTBD9 (BTB domain containing 9)

Identity

Alias_namesBTB (POZ) domain containing 9
Alias_symbol (synonym)KIAA1880
dJ322I12.1
Other alias
HGNC (Hugo) BTBD9
LocusID (NCBI) 114781
Atlas_Id 60831
Location 6p21.2  [Link to chromosome band 6p21]
Location_base_pair Starts at 38168451 and ends at 38640148 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BTBD9 (6p21.2) / ATAD1 (10q23.31)BTBD9 (6p21.2) / BTBD9 (6p21.2)BTBD9 (6p21.2) / CLPSL1 (6p21.31)
BTBD9 (6p21.2) / DNASE1L3 (3p14.3)BTBD9 (6p21.2) / FARS2 (6p25.1)BTBD9 (6p21.2) / FLJ44635 (Xq13.1)
BTBD9 (6p21.2) / GFAP (17q21.31)BTBD9 (6p21.2) / VSNL1 (2p24.2)FLJ44635 (Xq13.1) / BTBD9 (6p21.2)
SGPL1 (10q22.1) / BTBD9 (6p21.2)TRRAP (7q22.1) / BTBD9 (6p21.2)VSNL1 (2p24.2) / BTBD9 (6p21.2)
BTBD9 ATAD1BTBD9 FARS2BTBD9 C6orf127

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTBD9   21228
Cards
Entrez_Gene (NCBI)BTBD9  114781  BTB domain containing 9
AliasesdJ322I12.1
GeneCards (Weizmann)BTBD9
Ensembl hg19 (Hinxton)ENSG00000183826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183826 [Gene_View]  chr6:38168451-38640148 [Contig_View]  BTBD9 [Vega]
ICGC DataPortalENSG00000183826
TCGA cBioPortalBTBD9
AceView (NCBI)BTBD9
Genatlas (Paris)BTBD9
WikiGenes114781
SOURCE (Princeton)BTBD9
Genetics Home Reference (NIH)BTBD9
Genomic and cartography
GoldenPath hg38 (UCSC)BTBD9  -     chr6:38168451-38640148 -  6p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTBD9  -     6p21.2   [Description]    (hg19-Feb_2009)
EnsemblBTBD9 - 6p21.2 [CytoView hg19]  BTBD9 - 6p21.2 [CytoView hg38]
Mapping of homologs : NCBIBTBD9 [Mapview hg19]  BTBD9 [Mapview hg38]
OMIM611237   
Gene and transcription
Genbank (Entrez)AB067467 AK057507 AK090930 AK126242 AL157476
RefSeq transcript (Entrez)NM_001099272 NM_001172418 NM_052893 NM_152733
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTBD9
Cluster EST : UnigeneHs.603858 [ NCBI ]
CGAP (NCI)Hs.603858
Alternative Splicing GalleryENSG00000183826
Gene ExpressionBTBD9 [ NCBI-GEO ]   BTBD9 [ EBI - ARRAY_EXPRESS ]   BTBD9 [ SEEK ]   BTBD9 [ MEM ]
Gene Expression Viewer (FireBrowse)BTBD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114781
GTEX Portal (Tissue expression)BTBD9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96Q07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96Q07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96Q07
Splice isoforms : SwissVarQ96Q07
PhosPhoSitePlusQ96Q07
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB/POZ_dom    BTBD9_BACK-like_dom    FA58C    Galactose-bd-like    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    F5_F8_type_C (PF00754)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam00754   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  
Conserved Domain (NCBI)BTBD9
DMDM Disease mutations114781
Blocks (Seattle)BTBD9
SuperfamilyQ96Q07
Human Protein AtlasENSG00000183826
Peptide AtlasQ96Q07
HPRD12543
IPIIPI00396190   IPI00748597   IPI00914978   IPI00654713   IPI01014409   IPI00947036   IPI00947354   
Protein Interaction databases
DIP (DOE-UCLA)Q96Q07
IntAct (EBI)Q96Q07
FunCoupENSG00000183826
BioGRIDBTBD9
STRING (EMBL)BTBD9
ZODIACBTBD9
Ontologies - Pathways
QuickGOQ96Q07
Ontology : AmiGOcytoplasm  long-term memory  adult locomotory behavior  SCF ubiquitin ligase complex  regulation of proteolysis  ubiquitin protein ligase binding  serotonin metabolic process  circadian sleep/wake cycle, non-REM sleep  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  circadian behavior  modulation of synaptic transmission  sensory perception of temperature stimulus  multicellular organismal iron ion homeostasis  regulation of synaptic vesicle endocytosis  
Ontology : EGO-EBIcytoplasm  long-term memory  adult locomotory behavior  SCF ubiquitin ligase complex  regulation of proteolysis  ubiquitin protein ligase binding  serotonin metabolic process  circadian sleep/wake cycle, non-REM sleep  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  circadian behavior  modulation of synaptic transmission  sensory perception of temperature stimulus  multicellular organismal iron ion homeostasis  regulation of synaptic vesicle endocytosis  
NDEx NetworkBTBD9
Atlas of Cancer Signalling NetworkBTBD9
Wikipedia pathwaysBTBD9
Orthology - Evolution
OrthoDB114781
GeneTree (enSembl)ENSG00000183826
Phylogenetic Trees/Animal Genes : TreeFamBTBD9
HOVERGENQ96Q07
HOGENOMQ96Q07
Homologs : HomoloGeneBTBD9
Homology/Alignments : Family Browser (UCSC)BTBD9
Gene fusions - Rearrangements
Fusion: TCGABTBD9 ATAD1
Fusion: TCGABTBD9 FARS2
Fusion: TCGABTBD9 C6orf127
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTBD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTBD9
dbVarBTBD9
ClinVarBTBD9
1000_GenomesBTBD9 
Exome Variant ServerBTBD9
ExAC (Exome Aggregation Consortium)BTBD9 (select the gene name)
Genetic variants : HAPMAP114781
Genomic Variants (DGV)BTBD9 [DGVbeta]
DECIPHERBTBD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTBD9 
Mutations
ICGC Data PortalBTBD9 
TCGA Data PortalBTBD9 
Broad Tumor PortalBTBD9
OASIS PortalBTBD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTBD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTBD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTBD9
DgiDB (Drug Gene Interaction Database)BTBD9
DoCM (Curated mutations)BTBD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTBD9 (select a term)
intoGenBTBD9
Cancer3DBTBD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611237   
Orphanet
MedgenBTBD9
Genetic Testing Registry BTBD9
NextProtQ96Q07 [Medical]
TSGene114781
GENETestsBTBD9
Target ValidationBTBD9
Huge Navigator BTBD9 [HugePedia]
snp3D : Map Gene to Disease114781
BioCentury BCIQBTBD9
ClinGenBTBD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114781
Chemical/Pharm GKB GenePA134891920
Clinical trialBTBD9
Miscellaneous
canSAR (ICR)BTBD9 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTBD9
EVEXBTBD9
GoPubMedBTBD9
iHOPBTBD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:31 CEST 2017

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