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BTD (biotinidase)

Identity

HGNC (Hugo) BTD
LocusID (NCBI) 686
Atlas_Id 53260
Location 3p25.1
Location_base_pair Starts at 15643252 and ends at 15687328 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BTD (3p25.1) / FGD5 (3p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTD   1122
Cards
Entrez_Gene (NCBI)BTD  686  biotinidase
GeneCards (Weizmann)BTD
Ensembl hg19 (Hinxton)ENSG00000169814 [Gene_View]  chr3:15643252-15687328 [Contig_View]  BTD [Vega]
Ensembl hg38 (Hinxton)ENSG00000169814 [Gene_View]  chr3:15643252-15687328 [Contig_View]  BTD [Vega]
ICGC DataPortalENSG00000169814
TCGA cBioPortalBTD
AceView (NCBI)BTD
Genatlas (Paris)BTD
WikiGenes686
SOURCE (Princeton)BTD
Genomic and cartography
GoldenPath hg19 (UCSC)BTD  -     chr3:15643252-15687328 +  3p25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BTD  -     3p25.1   [Description]    (hg38-Dec_2013)
EnsemblBTD - 3p25.1 [CytoView hg19]  BTD - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBIBTD [Mapview hg19]  BTD [Mapview hg38]
OMIM253260   609019   
Gene and transcription
Genbank (Entrez)AI391654 AK294301 AK297033 AK301838 AK313252
RefSeq transcript (Entrez)NM_000060 NM_001281723 NM_001281724 NM_001281725 NM_001281726
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_008019 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)BTD
Cluster EST : UnigeneHs.517830 [ NCBI ]
CGAP (NCI)Hs.517830
Alternative Splicing GalleryENSG00000169814
Gene ExpressionBTD [ NCBI-GEO ]   BTD [ EBI - ARRAY_EXPRESS ]   BTD [ SEEK ]   BTD [ MEM ]
Gene Expression Viewer (FireBrowse)BTD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)686
GTEX Portal (Tissue expression)BTD
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43251 (Uniprot)
NextProtP43251  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43251
Splice isoforms : SwissVarP43251 (Swissvar)
Catalytic activity : Enzyme3.5.1.12 [ Enzyme-Expasy ]   3.5.1.123.5.1.12 [ IntEnz-EBI ]   3.5.1.12 [ BRENDA ]   3.5.1.12 [ KEGG ]   
PhosPhoSitePlusP43251
Domaine pattern : Prosite (Expaxy)CN_HYDROLASE (PS50263)   
Domains : Interpro (EBI)Biotinidase_euk    C-N_Hydrolase   
Domain families : Pfam (Sanger)CN_hydrolase (PF00795)   
Domain families : Pfam (NCBI)pfam00795   
DMDM Disease mutations686
Blocks (Seattle)BTD
SuperfamilyP43251
Human Protein AtlasENSG00000169814
Peptide AtlasP43251
HPRD08359
IPIIPI00218413   IPI00926737   IPI00927683   IPI00744685   IPI00927266   IPI00926967   
Protein Interaction databases
DIP (DOE-UCLA)P43251
IntAct (EBI)P43251
FunCoupENSG00000169814
BioGRIDBTD
STRING (EMBL)BTD
ZODIACBTD
Ontologies - Pathways
QuickGOP43251
Ontology : AmiGOextracellular region  extracellular space  mitochondrial matrix  biotin metabolic process  biotin metabolic process  central nervous system development  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds  biotinidase activity  extracellular exosome  
Ontology : EGO-EBIextracellular region  extracellular space  mitochondrial matrix  biotin metabolic process  biotin metabolic process  central nervous system development  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds  biotinidase activity  extracellular exosome  
Pathways : KEGGBiotin metabolism    Vitamin digestion and absorption   
NDEx Network
Atlas of Cancer Signalling NetworkBTD
Wikipedia pathwaysBTD
Orthology - Evolution
OrthoDB686
GeneTree (enSembl)ENSG00000169814
Phylogenetic Trees/Animal Genes : TreeFamBTD
Homologs : HomoloGeneBTD
Homology/Alignments : Family Browser (UCSC)BTD
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerBTD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTD
dbVarBTD
ClinVarBTD
1000_GenomesBTD 
Exome Variant ServerBTD
ExAC (Exome Aggregation Consortium)BTD (select the gene name)
Genetic variants : HAPMAP686
Genomic Variants (DGV)BTD [DGVbeta]
Mutations
ICGC Data PortalBTD 
TCGA Data PortalBTD 
Broad Tumor PortalBTD
OASIS PortalBTD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTD 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch BTD
DgiDB (Drug Gene Interaction Database)BTD
DoCM (Curated mutations)BTD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTD (select a term)
intoGenBTD
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:15643252-15687328  ENSG00000169814
CONAN: Copy Number AnalysisBTD 
Mutations and Diseases : HGMDBTD
OMIM253260    609019   
MedgenBTD
Genetic Testing Registry BTD
NextProtP43251 [Medical]
TSGene686
GENETestsBTD
Huge Navigator BTD [HugePedia]
snp3D : Map Gene to Disease686
BioCentury BCIQBTD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD686
Chemical/Pharm GKB GenePA25443
Clinical trialBTD
Miscellaneous
canSAR (ICR)BTD (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTD
EVEXBTD
GoPubMedBTD
iHOPBTD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 8 18:39:02 CEST 2016

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