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BTF3 (basic transcription factor 3)

Identity

Alias_namesNACB
nascent-polypeptide-associated complex beta polypeptide
Alias_symbol (synonym)BTF3a
BTF3b
Other aliasBETA-NAC
HGNC (Hugo) BTF3
LocusID (NCBI) 689
Atlas_Id 49761
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 72794250 and ends at 72801448 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BTF3 (5q13.2) / GGA1 (22q13.1)BTF3 (5q13.2) / STAU1 (20q13.13)SH3BGRL3 (1p36.11) / BTF3 (5q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTF3   1125
Cards
Entrez_Gene (NCBI)BTF3  689  basic transcription factor 3
AliasesBETA-NAC; BTF3a; BTF3b; NACB
GeneCards (Weizmann)BTF3
Ensembl hg19 (Hinxton)ENSG00000145741 [Gene_View]  chr5:72794250-72801448 [Contig_View]  BTF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145741 [Gene_View]  chr5:72794250-72801448 [Contig_View]  BTF3 [Vega]
ICGC DataPortalENSG00000145741
TCGA cBioPortalBTF3
AceView (NCBI)BTF3
Genatlas (Paris)BTF3
WikiGenes689
SOURCE (Princeton)BTF3
Genetics Home Reference (NIH)BTF3
Genomic and cartography
GoldenPath hg19 (UCSC)BTF3  -     chr5:72794250-72801448 +  5q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BTF3  -     5q13.2   [Description]    (hg38-Dec_2013)
EnsemblBTF3 - 5q13.2 [CytoView hg19]  BTF3 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBIBTF3 [Mapview hg19]  BTF3 [Mapview hg38]
OMIM602542   
Gene and transcription
Genbank (Entrez)AB062126 AK225964 AK291125 AK310919 BC008062
RefSeq transcript (Entrez)NM_001037637 NM_001207
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)BTF3
Cluster EST : UnigeneHs.591768 [ NCBI ]
CGAP (NCI)Hs.591768
Alternative Splicing GalleryENSG00000145741
Gene ExpressionBTF3 [ NCBI-GEO ]   BTF3 [ EBI - ARRAY_EXPRESS ]   BTF3 [ SEEK ]   BTF3 [ MEM ]
Gene Expression Viewer (FireBrowse)BTF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)689
GTEX Portal (Tissue expression)BTF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20290   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP20290  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP20290
Splice isoforms : SwissVarP20290
PhosPhoSitePlusP20290
Domaine pattern : Prosite (Expaxy)NAC_AB (PS51151)   
Domains : Interpro (EBI)Nas_poly-pep-assoc_cplx_dom   
Domain families : Pfam (Sanger)NAC (PF01849)   
Domain families : Pfam (NCBI)pfam01849   
Conserved Domain (NCBI)BTF3
DMDM Disease mutations689
Blocks (Seattle)BTF3
PDB (SRS)3LKX    3MCB   
PDB (PDBSum)3LKX    3MCB   
PDB (IMB)3LKX    3MCB   
PDB (RSDB)3LKX    3MCB   
Structural Biology KnowledgeBase3LKX    3MCB   
SCOP (Structural Classification of Proteins)3LKX    3MCB   
CATH (Classification of proteins structures)3LKX    3MCB   
SuperfamilyP20290
Human Protein AtlasENSG00000145741
Peptide AtlasP20290
HPRD03966
IPIIPI00221035   IPI00419473   IPI00965254   IPI00967045   
Protein Interaction databases
DIP (DOE-UCLA)P20290
IntAct (EBI)P20290
FunCoupENSG00000145741
BioGRIDBTF3
STRING (EMBL)BTF3
ZODIACBTF3
Ontologies - Pathways
QuickGOP20290
Ontology : AmiGOin utero embryonic development  protein binding  nucleus  cytoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  protein transport  poly(A) RNA binding  
Ontology : EGO-EBIin utero embryonic development  protein binding  nucleus  cytoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  protein transport  poly(A) RNA binding  
NDEx NetworkBTF3
Atlas of Cancer Signalling NetworkBTF3
Wikipedia pathwaysBTF3
Orthology - Evolution
OrthoDB689
GeneTree (enSembl)ENSG00000145741
Phylogenetic Trees/Animal Genes : TreeFamBTF3
HOVERGENP20290
HOGENOMP20290
Homologs : HomoloGeneBTF3
Homology/Alignments : Family Browser (UCSC)BTF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTF3
dbVarBTF3
ClinVarBTF3
1000_GenomesBTF3 
Exome Variant ServerBTF3
ExAC (Exome Aggregation Consortium)BTF3 (select the gene name)
Genetic variants : HAPMAP689
Genomic Variants (DGV)BTF3 [DGVbeta]
DECIPHER (Syndromes)5:72794250-72801448  ENSG00000145741
CONAN: Copy Number AnalysisBTF3 
Mutations
ICGC Data PortalBTF3 
TCGA Data PortalBTF3 
Broad Tumor PortalBTF3
OASIS PortalBTF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTF3
DgiDB (Drug Gene Interaction Database)BTF3
DoCM (Curated mutations)BTF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTF3 (select a term)
intoGenBTF3
Cancer3DBTF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602542   
Orphanet
MedgenBTF3
Genetic Testing Registry BTF3
NextProtP20290 [Medical]
TSGene689
GENETestsBTF3
Huge Navigator BTF3 [HugePedia]
snp3D : Map Gene to Disease689
BioCentury BCIQBTF3
ClinGenBTF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD689
Chemical/Pharm GKB GenePA25445
Clinical trialBTF3
Miscellaneous
canSAR (ICR)BTF3 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTF3
EVEXBTF3
GoPubMedBTF3
iHOPBTF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:18 CEST 2017

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