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BTF3 (basic transcription factor 3)

Identity

Alias (NCBI)BETA-NAC
BTF3a
BTF3b
NACB
HGNC (Hugo) BTF3
HGNC Alias symbBTF3a
BTF3b
HGNC Previous nameNACB
HGNC Previous namenascent-polypeptide-associated complex beta polypeptide
LocusID (NCBI) 689
Atlas_Id 49761
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 73498425 and ends at 73505623 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTF3 (5q13.2)::GGA1 (22q13.1)BTF3 (5q13.2)::STAU1 (20q13.13)SH3BGRL3 (1p36.11)::BTF3 (5q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)BTF3   1125
Cards
Entrez_Gene (NCBI)BTF3    basic transcription factor 3
AliasesBETA-NAC; BTF3a; BTF3b; NACB
GeneCards (Weizmann)BTF3
Ensembl hg19 (Hinxton)ENSG00000145741 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145741 [Gene_View]  ENSG00000145741 [Sequence]  chr5:73498425-73505623 [Contig_View]  BTF3 [Vega]
ICGC DataPortalENSG00000145741
TCGA cBioPortalBTF3
AceView (NCBI)BTF3
Genatlas (Paris)BTF3
SOURCE (Princeton)BTF3
Genetics Home Reference (NIH)BTF3
Genomic and cartography
GoldenPath hg38 (UCSC)BTF3  -     chr5:73498425-73505623 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTF3  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathBTF3 - 5q13.2 [CytoView hg19]  BTF3 - 5q13.2 [CytoView hg38]
ImmunoBaseENSG00000145741
Genome Data Viewer NCBIBTF3 [Mapview hg19]  
OMIM602542   
Gene and transcription
Genbank (Entrez)AB062126 AK225964 AK291125 AK310919 BC008062
RefSeq transcript (Entrez)NM_001037637 NM_001207 NM_001393652 NM_001393653
Consensus coding sequences : CCDS (NCBI)BTF3
Gene ExpressionBTF3 [ NCBI-GEO ]   BTF3 [ EBI - ARRAY_EXPRESS ]   BTF3 [ SEEK ]   BTF3 [ MEM ]
Gene Expression Viewer (FireBrowse)BTF3 [ Firebrowse - Broad ]
GenevisibleExpression of BTF3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)689
GTEX Portal (Tissue expression)BTF3
Human Protein AtlasENSG00000145741-BTF3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20290   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP20290  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP20290
PhosPhoSitePlusP20290
Domaine pattern : Prosite (Expaxy)NAC_AB (PS51151)   
Domains : Interpro (EBI)BTF3    NAC_A/B_dom_sf    Nas_poly-pep-assoc_cplx_dom   
Domain families : Pfam (Sanger)NAC (PF01849)   
Domain families : Pfam (NCBI)pfam01849   
Domain families : Smart (EMBL)NAC (SM01407)  
Conserved Domain (NCBI)BTF3
PDB (RSDB)3LKX    3MCB   
PDB Europe3LKX    3MCB   
PDB (PDBSum)3LKX    3MCB   
PDB (IMB)3LKX    3MCB   
Structural Biology KnowledgeBase3LKX    3MCB   
SCOP (Structural Classification of Proteins)3LKX    3MCB   
CATH (Classification of proteins structures)3LKX    3MCB   
SuperfamilyP20290
AlphaFold pdb e-kbP20290   
Human Protein Atlas [tissue]ENSG00000145741-BTF3 [tissue]
HPRD03966
Protein Interaction databases
DIP (DOE-UCLA)P20290
IntAct (EBI)P20290
BioGRIDBTF3
STRING (EMBL)BTF3
ZODIACBTF3
Ontologies - Pathways
QuickGOP20290
Ontology : AmiGOin utero embryonic development  RNA binding  protein binding  nucleus  cytosol  cytosol  nascent polypeptide-associated complex  transcription by RNA polymerase II  protein transport  polysomal ribosome  
Ontology : EGO-EBIin utero embryonic development  RNA binding  protein binding  nucleus  cytosol  cytosol  nascent polypeptide-associated complex  transcription by RNA polymerase II  protein transport  polysomal ribosome  
NDEx NetworkBTF3
Atlas of Cancer Signalling NetworkBTF3
Wikipedia pathwaysBTF3
Orthology - Evolution
OrthoDB689
GeneTree (enSembl)ENSG00000145741
Phylogenetic Trees/Animal Genes : TreeFamBTF3
Homologs : HomoloGeneBTF3
Homology/Alignments : Family Browser (UCSC)BTF3
Gene fusions - Rearrangements
Fusion : QuiverBTF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTF3
dbVarBTF3
ClinVarBTF3
MonarchBTF3
1000_GenomesBTF3 
Exome Variant ServerBTF3
GNOMAD BrowserENSG00000145741
Varsome BrowserBTF3
ACMGBTF3 variants
VarityP20290
Genomic Variants (DGV)BTF3 [DGVbeta]
DECIPHERBTF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTF3 
Mutations
ICGC Data PortalBTF3 
TCGA Data PortalBTF3 
Broad Tumor PortalBTF3
OASIS PortalBTF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTF3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBTF3
Mutations and Diseases : HGMDBTF3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaBTF3
DgiDB (Drug Gene Interaction Database)BTF3
DoCM (Curated mutations)BTF3
CIViC (Clinical Interpretations of Variants in Cancer)BTF3
Cancer3DBTF3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602542   
Orphanet
DisGeNETBTF3
MedgenBTF3
Genetic Testing Registry BTF3
NextProtP20290 [Medical]
GENETestsBTF3
Target ValidationBTF3
Huge Navigator BTF3 [HugePedia]
ClinGenBTF3
Clinical trials, drugs, therapy
MyCancerGenomeBTF3
Protein Interactions : CTDBTF3
Pharm GKB GenePA25445
PharosP20290
Clinical trialBTF3
Miscellaneous
canSAR (ICR)BTF3
HarmonizomeBTF3
ARCHS4BTF3
DataMed IndexBTF3
Probes
Litterature
PubMed69 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBTF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jan 17 15:16:41 CET 2022

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